Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012664.1 Corchorus capsularis cultivar CVL-1 contig12685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7843
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32


Found at i:477 original size:13 final size:12

Alignment explanation


    Indices: 461--493  Score: 50
    Period size: 13  Copynumber: 2.8  Consensus size: 12

        451 ATTAATTTGT

                         
        461 TTTAGATTTAAGA
          1 TTTAGATTT-AGA

                        
        474 TTTAGATTTAGA
          1 TTTAGATTTAGA

                     
        486 TTT-GATTT
          1 TTTAGATTT

        494 GCTTTGCTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  11    5  0.25
  12    6  0.30
  13    9  0.45

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55


Consensus pattern (12 bp):   
TTTAGATTTAGA

Found at i:480 original size:6 final size:6

Alignment explanation


    Indices: 461--493  Score: 50
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        451 ATTAATTTGT

                                                   
        461 TTTAGA TTTAAGA TTTAGA TTTAGA TTT-GA TTT
          1 TTTAGA TTT-AGA TTTAGA TTTAGA TTTAGA TTT

        494 GCTTTGCTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
   5    5  0.19
   6   15  0.58
   7    6  0.23

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55


Consensus pattern (6 bp):   
TTTAGA
Done.