Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012667.1 Corchorus capsularis cultivar CVL-1 contig12688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40135

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3648--3690
13
3.2
13
84
15
52
32
0
6
60
1.23
5906--5946
12
3.3
12
86
6
55
26
17
19
36
1.94
8162--8194
12
2.6
13
85
9
50
0
24
0
75
0.80
9315--9371
13
4.2
13
80
10
53
31
12
10
45
1.76
9315--9371
27
2.1
27
83
6
71
31
12
10
45
1.76
14235--14269
13
2.7
13
100
0
70
20
8
8
62
1.49
14266--14292
6
4.5
6
100
0
54
29
0
14
55
1.40
20304--20331
10
2.8
10
100
0
56
46
21
10
21
1.81
21269--21295
6
4.5
6
100
0
54
29
0
14
55
1.40
21850--21898
21
2.3
21
80
16
57
32
14
12
40
1.83
22042--22071
13
2.2
14
94
5
53
43
10
26
20
1.83
26197--26243
25
1.9
25
91
4
78
53
0
0
46
1.00
28063--28104
21
2.0
21
100
0
84
19
9
38
33
1.84
31001--31038
2
19.0
2
100
0
76
50
0
0
50
1.00
32090--32127
3
12.7
3
100
0
76
68
0
31
0
0.90
32965--33320
156
2.3
154
78
8
339
30
16
19
33
1.94
35620--35653
16
2.2
16
89
5
52
58
11
2
26
1.47

Tables:   1

The End!