Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001267.1 Corchorus capsularis cultivar CVL-1 contig01267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8985
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:30 original size:2 final size:2

Alignment explanation


    Indices: 23--75  Score: 106
    Period size: 2  Copynumber: 26.5  Consensus size: 2

         13 TCCCTCCCTT

                                                                          
         23 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                            
         65 TC TC TC TC TC T
          1 TC TC TC TC TC T

         76 TTTTGGCCAA


Statistics
Matches: 51,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   51  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Found at i:6153 original size:36 final size:36

Alignment explanation


    Indices: 6102--6171  Score: 122
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       6092 CTAGAGAAAA

                      *                 *       
       6102 TGTGGGAGTGGGTGAATCCAAGACACATTTTATTAG
          1 TGTGGGAGTGAGTGAATCCAAGACACATCTTATTAG

                                              
       6138 TGTGGGAGTGAGTGAATCCAAGACACATCTTATT
          1 TGTGGGAGTGAGTGAATCCAAGACACATCTTATT

       6172 CCCGATATTC


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   32  1.00

ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30


Consensus pattern (36 bp):   
TGTGGGAGTGAGTGAATCCAAGACACATCTTATTAG
Done.