Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012671.1 Corchorus capsularis cultivar CVL-1 contig12692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16146

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2602--2631
16
1.9
15
93
6
51
70
13
0
16
1.18
5604--5633
15
2.1
14
93
6
51
36
10
20
33
1.86
5523--5687
91
1.8
88
89
6
260
39
11
14
34
1.82
6019--6064
18
2.5
18
82
3
56
60
0
23
15
1.34
6375--6422
6
8.3
6
82
13
57
83
0
16
0
0.65
6375--6420
20
2.3
20
88
7
67
82
0
17
0
0.67
6375--6440
34
2.0
34
87
3
98
77
0
22
0
0.77
6375--6440
33
2.2
29
82
15
80
77
0
22
0
0.77
7253--7286
8
4.2
8
84
0
50
29
20
0
50
1.49
7243--7621
58
6.5
58
92
1
542
26
21
10
40
1.86
7370--7403
8
4.2
8
84
0
50
29
20
0
50
1.49
7604--7740
8
18.0
8
68
25
59
29
22
2
44
1.67
7614--7802
8
26.7
7
69
22
51
30
21
3
45
1.67
7616--7917
14
21.0
13
67
24
71
29
21
4
44
1.71
7624--7684
20
3.1
19
86
9
70
32
21
1
44
1.62
7691--7748
22
2.6
23
78
5
75
31
22
3
43
1.70
7692--7798
50
2.1
50
84
6
137
31
18
3
45
1.67
7742--7797
22
2.5
22
94
0
94
32
16
3
48
1.63
7933--7979
8
5.9
8
82
0
58
27
23
2
46
1.63
14379--14536
75
2.1
75
97
1
298
34
10
18
36
1.86
14858--14887
15
2.0
15
93
0
51
20
10
26
43
1.83
15434--15476
22
2.0
22
90
0
68
25
23
6
44
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15398--15514
58
2.0
59
91
3
191
30
23
7
38
1.83
15502--15552
22
2.3
22
89
0
75
29
11
9
49
1.72
15488--15529
14
2.8
15
85
7
50
28
21
4
45
1.72
15439--15619
96
1.9
95
83
4
238
30
19
7
42
1.78
15562--15646
22
3.8
22
80
7
75
29
21
5
43
1.76
15635--15680
14
3.4
14
80
17
60
30
17
2
50
1.58

Tables:   1

The End!