Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012678.1 Corchorus capsularis cultivar CVL-1 contig12699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61195

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
236--270
11
3.2
11
83
0
52
77
17
5
0
0.96
1074--1106
17
2.0
17
88
5
50
24
9
24
42
1.83
2946--2995
26
1.9
26
91
0
82
46
14
10
30
1.77
5117--5151
17
2.0
18
88
5
54
11
8
17
62
1.52
6155--6239
23
3.7
23
74
10
84
44
8
10
36
1.69
9900--9934
17
2.0
18
88
5
54
11
8
17
62
1.52
13024--13049
10
2.6
10
100
0
52
38
23
7
30
1.83
14326--14379
12
4.5
12
84
9
74
25
25
12
35
1.92
16315--16349
10
3.5
10
88
11
54
8
2
5
82
0.91
17387--17454
30
2.3
31
82
7
86
14
29
29
26
1.95
23302--23494
94
2.0
95
97
1
370
32
17
8
41
1.80
37282--37353
33
2.2
33
84
0
90
45
19
8
26
1.78
39805--39847
21
2.0
21
86
0
59
20
20
32
25
1.97
50721--50772
26
2.0
26
92
0
86
23
13
17
46
1.83
51383--51431
20
2.5
20
86
0
62
6
26
0
67
1.14
54129--54181
16
3.3
16
75
0
52
58
26
9
5
1.52
54129--54190
32
1.9
32
83
0
79
54
27
9
8
1.61
54139--54194
16
3.5
16
78
9
60
53
26
10
8
1.65
54414--54503
32
2.8
32
81
6
110
40
34
8
16
1.80
56932--56974
22
2.0
22
85
0
59
27
25
32
13
1.94

Tables:   1

The End!