genome.fa.s12682.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012682.1 Corchorus capsularis cultivar CVL-1 contig12703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10605

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331--1365	9	3.8	9	88	3	52	20	0	0	80	0.72
2680--2733	21	2.6	21	78	18	67	25	14	7	51	1.68
2764--2893	34	3.8	34	72	13	99	16	25	4	53	1.63
2880--3475	7	88.4	7	62	19	137	15	23	3	56	1.56
2881--2905	12	2.1	12	100	0	50	16	32	0	52	1.44
2880--3166	26	11.3	26	64	19	72	15	25	3	56	1.54
2859--3186	46	7.7	46	84	11	348	15	24	3	56	1.56
2943--2997	19	2.8	19	73	13	58	12	25	1	60	1.43
2954--3030	20	3.5	20	74	12	55	12	25	2	58	1.48
2970--3343	27	13.3	26	69	21	76	15	23	3	57	1.55
2943--3226	81	3.5	81	77	11	339	15	23	3	57	1.54
2982--3294	34	9.4	34	80	12	348	16	22	4	56	1.57
3031--3088	20	3.2	20	65	34	58	18	18	6	55	1.65
2960--3426	149	3.1	148	89	8	697	16	22	4	56	1.57
3102--3175	20	3.4	20	70	20	58	13	27	1	58	1.44
3123--3159	19	1.9	19	88	0	56	13	27	2	56	1.50
3102--3192	20	4.2	20	70	15	56	14	25	2	58	1.48
2982--3425	115	3.9	112	82	10	402	16	22	4	56	1.57
3193--3284	15	5.2	20	63	36	68	18	20	6	54	1.66
3281--3306	12	2.2	12	100	0	52	15	23	0	61	1.33
3297--3336	20	2.0	21	85	5	55	12	25	2	60	1.45
3342--3399	20	3.2	20	65	34	58	18	20	6	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3213--3375	81	2.0	80	95	1	290	16	22	4	57	1.57
3293--3409	34	3.4	34	94	2	198	16	22	4	57	1.56
3490--3774	21	13.4	22	77	11	215	19	20	5	54	1.65
3490--3774	42	6.7	43	84	6	264	19	20	5	54	1.65
3530--3712	14	13.0	13	65	16	62	18	19	6	55	1.64
7351--7394	21	2.1	21	95	0	79	31	25	0	43	1.55
8737--8817	33	2.5	33	80	5	87	12	27	33	27	1.92

Tables:   1

The End!