Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012684.1 Corchorus capsularis cultivar CVL-1 contig12705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12790
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29


Found at i:9440 original size:30 final size:30

Alignment explanation


    Indices: 9404--9460  Score: 87
    Period size: 30  Copynumber: 1.9  Consensus size: 30

       9394 CCAAATAGGT

                       *   *              
       9404 AATGATGCGCCCAAGGCTTATAATGGAAGG
          1 AATGATGCGCCAAAGACTTATAATGGAAGG

                                 *     
       9434 AATGATGCGCCAAAGACTTATTATGGA
          1 AATGATGCGCCAAAGACTTATAATGGA

       9461 CTTGAAGACA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   24  1.00

ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23


Consensus pattern (30 bp):   
AATGATGCGCCAAAGACTTATAATGGAAGG
Done.