Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012687.1 Corchorus capsularis cultivar CVL-1 contig12708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27024

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
298--344
24
2.0
23
84
12
60
14
12
4
68
1.36
293--329
17
2.1
18
90
5
58
18
10
2
67
1.32
9281--9879
41
14.0
41
80
11
568
45
11
17
25
1.82
9283--9886
129
4.7
127
83
8
592
45
11
17
25
1.82
9871--10055
36
5.1
36
82
3
201
43
9
19
27
1.81
9871--10062
73
2.6
71
82
4
231
44
9
19
26
1.81
10061--10274
39
5.4
39
93
1
347
47
13
19
20
1.82
10282--10362
36
2.3
35
81
12
94
44
12
19
23
1.85
10334--10444
37
3.4
31
80
13
89
45
6
24
23
1.75
10396--10456
18
3.3
18
68
20
54
45
6
24
22
1.76
10377--10593
37
5.9
37
95
0
371
43
6
25
24
1.78
10378--10438
19
3.3
19
70
21
65
47
3
27
21
1.66
10586--10736
36
4.2
36
90
1
214
42
10
18
28
1.83
12500--12591
33
2.8
32
85
8
114
8
28
38
25
1.85
17939--17974
11
3.4
10
88
11
54
13
0
0
86
0.58
17941--17974
17
1.9
18
88
5
52
14
0
0
85
0.60
19049--19102
23
2.3
23
84
6
65
11
31
38
18
1.86
19073--19136
33
1.9
33
87
0
92
9
31
37
21
1.85
20989--21017
15
2.0
15
93
6
51
48
13
3
34
1.60
22190--22296
33
3.2
33
83
7
128
24
39
28
7
1.82
23238--23271
8
4.1
8
85
7
50
58
14
2
23
1.50

Tables:   1

The End!