Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012689.1 Corchorus capsularis cultivar CVL-1 contig12710, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3822
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36


Found at i:709 original size:13 final size:14

Alignment explanation


    Indices: 691--719  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

        681 ATAATTGGAC

                          
        691 TTTGCATTCAT-CA
          1 TTTGCATTCATGCA

                          
        704 TTTGCATTCATGCA
          1 TTTGCATTCATGCA

              
        718 TT
          1 TT

        720 GAGTAGAAGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   11  0.73
  14    4  0.27

ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48


Consensus pattern (14 bp):   
TTTGCATTCATGCA
Done.