Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012690.1 Corchorus capsularis cultivar CVL-1 contig12711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84839

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5344--5600
129
2.0
129
93
1
435
26
26
14
33
1.94
8510--8674
36
4.6
36
74
7
154
13
20
30
34
1.92
8658--8714
29
2.1
27
81
12
64
15
14
21
49
1.80
9515--9543
14
2.1
14
100
0
58
31
13
20
34
1.92
11729--11964
35
6.7
36
76
6
207
40
9
17
32
1.82
11723--11893
71
2.4
71
81
1
191
42
7
17
32
1.78
11731--11964
106
2.2
105
84
6
285
40
8
17
32
1.81
22877--22917
20
2.0
20
95
0
73
48
21
0
29
1.50
23477--23538
32
1.9
32
93
0
106
46
0
11
41
1.39
24884--24917
14
2.4
14
95
5
59
35
8
26
29
1.87
25427--25470
22
2.0
22
86
0
61
45
2
11
40
1.53
25766--25842
38
2.0
38
97
0
145
20
22
10
46
1.80
46398--46430
17
2.1
16
88
11
50
27
30
0
42
1.56
46609--46672
33
1.9
33
83
0
83
23
9
23
43
1.82
46688--46761
33
2.2
33
100
0
148
33
8
17
40
1.79
47150--47210
30
2.0
30
93
6
106
29
18
32
19
1.95
48859--48888
15
1.9
16
93
6
53
46
40
13
0
1.43
48941--49068
16
8.0
16
66
13
66
50
29
12
7
1.66
48947--49068
32
3.8
32
90
0
190
51
29
12
6
1.64
49216--49321
32
3.4
31
90
2
167
36
38
10
14
1.80
50155--50186
12
2.7
12
95
0
55
9
25
43
21
1.82
54673--54708
12
2.8
13
95
4
65
25
25
13
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54673--54715
12
3.5
12
84
6
50
27
20
16
34
1.94
56906--57088
32
5.5
32
82
10
197
28
21
7
42
1.80
56927--57102
68
2.6
66
85
8
223
29
22
6
41
1.79
57098--57320
39
5.7
39
86
7
260
24
20
8
46
1.78
57185--57248
20
3.2
20
64
4
58
26
15
9
48
1.75
57130--57330
39
5.1
39
91
2
321
23
20
8
47
1.77
57534--57614
40
2.0
40
83
4
101
28
22
8
40
1.83
57576--57755
70
2.6
69
83
7
211
27
22
9
41
1.84
57786--57940
71
2.2
71
89
5
235
23
21
9
45
1.80
57616--58107
167
3.0
166
88
4
689
25
22
8
43
1.81
57856--58036
96
1.9
97
88
3
276
24
22
7
45
1.78
57960--58181
71
3.1
70
85
4
277
27
22
7
43
1.80
58214--58252
10
3.9
10
96
0
69
20
12
0
66
1.24
58218--58261
20
2.2
20
83
0
52
27
13
0
59
1.35
59808--59848
19
2.2
19
86
0
55
2
14
7
75
1.12
61439--61538
26
3.8
27
80
5
89
46
21
14
19
1.84
61458--61513
27
2.1
26
93
3
94
44
23
14
17
1.85
61466--61540
25
2.9
26
84
4
89
44
25
14
16
1.85
62156--62221
35
1.9
34
84
6
89
22
19
4
53
1.64
65336--65405
29
2.4
30
87
2
97
20
12
30
37
1.90
66389--66441
24
2.2
24
77
16
56
66
11
1
20
1.33
73303--73596
143
2.1
143
96
1
545
21
15
22
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78317--78367
18
2.9
17
74
5
50
25
9
13
50
1.72
78800--78871
35
2.0
36
84
7
94
25
12
4
58
1.52

Tables:   1

The End!