genome.fa.s12698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012698.1 Corchorus capsularis cultivar CVL-1 contig12719, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74643

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3460--3539	40	2.0	40	87	0	115	23	23	20	32	1.98
4357--4576	26	7.8	26	70	26	141	38	29	14	18	1.90
4348--4598	58	4.4	57	91	5	391	38	29	13	19	1.89
4348--4598	114	2.2	115	91	3	409	38	29	13	19	1.89
5270--5365	35	2.7	34	76	6	93	28	29	15	27	1.96
5732--6134	72	5.6	72	87	2	562	21	27	20	30	1.98
5723--6128	216	1.9	214	91	2	670	21	27	20	30	1.98
14120--14418	48	6.2	48	87	3	379	26	30	13	29	1.94
14411--14692	62	4.5	62	86	1	334	26	25	14	34	1.94
17585--17613	6	4.8	6	100	0	58	48	17	0	34	1.47
18415--18448	6	5.7	6	92	0	59	26	0	38	35	1.57
20703--20746	20	2.2	20	87	0	61	27	6	2	63	1.31
21489--21522	6	5.7	6	92	0	59	35	38	0	26	1.57
25168--25194	12	2.2	12	100	0	54	37	7	0	55	1.28
25190--25273	6	14.5	6	78	14	88	50	0	19	30	1.48
25192--25285	18	5.4	18	80	13	108	50	0	20	29	1.49
25192--25285	12	8.2	12	83	10	83	50	0	20	29	1.49
34352--35335	430	2.3	434	82	5	1130	41	12	14	31	1.83
36444--36531	45	2.0	45	88	4	133	27	21	20	30	1.98
36298--36692	211	1.9	211	84	2	542	36	15	16	31	1.90
43332--43434	33	3.1	33	97	0	188	28	10	16	44	1.81
43295--43434	66	2.1	66	81	2	156	30	10	16	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43815--43873	30	2.0	30	90	6	93	33	15	28	22	1.94
47933--48292	156	2.3	155	82	7	410	31	13	19	35	1.91
51020--51069	21	2.4	21	86	0	73	30	28	32	10	1.89
55284--55308	10	2.5	10	100	0	50	24	8	20	48	1.76
66656--66686	6	5.2	6	100	0	62	19	0	32	48	1.49
66705--66738	11	2.9	12	86	8	52	73	5	0	20	1.04
72495--72526	13	2.4	14	85	15	50	53	12	6	28	1.62

Tables:   1

The End!