Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000127.1 Corchorus capsularis cultivar CVL-1 contig00127, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2290
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:1148 original size:24 final size:26

Alignment explanation


    Indices: 1105--1154  Score: 68
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1095 GGTTCGAGTC

                         *       *    
       1105 GATAAAAAAAAATTTGTTTTTGCGTT
          1 GATAAAAAAAAATGTGTTTTTCCGTT

                                      
       1131 GATAAAAAAAAA-GT-TTTTTCCGTT
          1 GATAAAAAAAAATGTGTTTTTCCGTT

       1155 TTTCCGTTTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  24    9  0.41
  25    1  0.05
  26   12  0.55

ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40


Consensus pattern (26 bp):   
GATAAAAAAAAATGTGTTTTTCCGTT
Done.