Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012700.1 Corchorus capsularis cultivar CVL-1 contig12721, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4691
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:2324 original size:13 final size:14

Alignment explanation


    Indices: 2300--2331  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       2290 GAATTTTAAT

                          
       2300 TAAATCTAACTAAG
          1 TAAATCTAACTAAG

                          
       2314 TAAAT-TAACTAAG
          1 TAAATCTAACTAAG

                  
       2327 -AAATC
          1 TAAATC

       2332 AATCAAGAAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  12    4  0.24
  13    8  0.47
  14    5  0.29

ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28


Consensus pattern (14 bp):   
TAAATCTAACTAAG

Found at i:3640 original size:19 final size:18

Alignment explanation


    Indices: 3607--3642  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       3597 TTGAAATAAT

                              
       3607 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
       3625 TCTTCAAATTATCTTCAA
          1 TCTTC-AATGATCTTCAA

       3643 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA
Done.