Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012707.1 Corchorus capsularis cultivar CVL-1 contig12728, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43109

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120--160
20
2.1
19
90
4
64
31
12
2
53
1.51
645--695
21
2.4
21
93
0
84
29
17
25
27
1.98
712--768
30
1.9
30
85
0
78
29
22
15
31
1.95
5455--5505
21
2.4
21
96
0
93
29
19
25
25
1.99
10048--10079
9
3.4
10
87
12
50
43
9
34
12
1.75
22664--22761
32
3.1
32
82
5
101
27
10
22
39
1.86
27569--27593
9
2.8
9
100
0
50
40
0
12
48
1.40
28811--28866
29
1.9
29
82
7
69
46
8
17
26
1.78
40611--40660
24
2.1
24
81
3
57
24
8
4
64
1.38
40727--40778
22
2.4
21
90
3
77
50
11
13
25
1.75
41064--41218
46
3.3
46
87
0
202
39
21
11
27
1.88
41177--41691
90
5.7
90
88
0
742
33
24
14
27
1.94
41343--41581
46
5.3
44
63
22
120
33
25
13
27
1.93
41177--41735
181
3.0
181
86
3
751
33
24
14
27
1.95
41177--41691
271
1.9
271
87
1
764
33
24
14
27
1.94
41978--42013
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!