Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012708.1 Corchorus capsularis cultivar CVL-1 contig12729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3269
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30


Found at i:2841 original size:24 final size:27

Alignment explanation


    Indices: 2814--2866  Score: 67
    Period size: 26  Copynumber: 2.1  Consensus size: 27

       2804 TTCTAGTGAT

                                 *     
       2814 GAGAAT-AAG-GAAGGAAAA-GAGGAG
          1 GAGAATCAAGAGAAGGAAAATAAGGAG

                   *                   
       2838 GAGAATCGAGAGAAGGAAAATAAGGAG
          1 GAGAATCAAGAGAAGGAAAATAAGGAG

              
       2865 GA
          1 GA

       2867 ATTTCATCCT


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  24    6  0.25
  25    2  0.08
  26    9  0.38
  27    7  0.29

ACGTcount: A:0.53, C:0.02, G:0.40, T:0.06


Consensus pattern (27 bp):   
GAGAATCAAGAGAAGGAAAATAAGGAG
Done.