Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001271.1 Corchorus capsularis cultivar CVL-1 contig01271, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1000
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:493 original size:29 final size:30

Alignment explanation


    Indices: 432--495  Score: 85
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        422 TTGGGACGTT

                 *    *                   
        432 AAGTTGAGGGGGCAAAACGTCCCAAAATTG
          1 AAGTTCAGGGAGCAAAACGTCCCAAAATTG

                             *       *    
        462 AAGTTCAGGGAGCAAAATGT-CCAAGATTG
          1 AAGTTCAGGGAGCAAAACGTCCCAAAATTG

                 
        491 AAGTT
          1 AAGTT

        496 TGGGGGTAAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  29   13  0.43
  30   17  0.57

ACGTcount: A:0.38, C:0.14, G:0.28, T:0.20


Consensus pattern (30 bp):   
AAGTTCAGGGAGCAAAACGTCCCAAAATTG
Done.