Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012713.1 Corchorus capsularis cultivar CVL-1 contig12734, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2398
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:2040 original size:15 final size:15

Alignment explanation


    Indices: 2020--2049  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2010 AGGGGATTTT

                  *        
       2020 AAGAAAGCAATTAAA
          1 AAGAAAACAATTAAA

                           
       2035 AAGAAAACAATTAAA
          1 AAGAAAACAATTAAA

       2050 CTAAATACTA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.70, C:0.07, G:0.10, T:0.13


Consensus pattern (15 bp):   
AAGAAAACAATTAAA

Found at i:2083 original size:6 final size:6

Alignment explanation


    Indices: 2067--2097  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       2057 CTAAGCAAAG

                                                 
       2067 TAAAT- TAAATC TAAATC TAAATC TAAATC TA
          1 TAAATC TAAATC TAAATC TAAATC TAAATC TA

       2098 TAGCAATTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35


Consensus pattern (6 bp):   
TAAATC

Done.