genome.fa.s12720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012720.1 Corchorus capsularis cultivar CVL-1 contig12741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40236

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881--914	8	4.1	8	85	7	50	23	2	14	58	1.50
1816--1928	33	3.4	33	84	8	115	9	25	40	23	1.85
6071--6202	26	5.0	26	78	13	135	56	6	18	17	1.62
6071--6204	53	2.5	53	88	0	196	56	6	19	17	1.62
6278--6566	35	8.3	35	72	16	183	54	3	22	19	1.59
6459--6639	40	4.4	40	72	13	113	56	3	20	19	1.57
6485--6594	21	5.4	20	72	12	82	54	6	19	20	1.65
6592--6640	23	2.1	23	84	0	62	65	0	16	18	1.28
7919--7979	15	4.3	14	78	15	63	44	6	11	37	1.67
7918--7980	14	4.4	14	77	15	65	42	6	11	39	1.66
8578--8636	12	4.7	12	72	24	50	79	0	20	0	0.73
8580--8636	13	4.4	12	80	10	51	80	0	19	0	0.71
8580--8619	15	2.7	15	92	0	62	82	0	17	0	0.67
9206--9254	11	4.2	12	78	17	50	81	0	18	0	0.69
10107--10859	139	5.4	138	89	1	1073	25	28	17	28	1.97
10107--10859	69	10.9	69	89	1	1073	25	28	17	28	1.97
10107--10853	346	2.2	346	90	1	1169	25	28	17	28	1.97
13223--13264	23	2.0	21	81	13	50	40	2	38	19	1.64
13820--14432	51	12.1	50	78	5	588	40	4	16	37	1.69
13829--14388	101	5.5	101	89	4	860	40	4	16	38	1.68
13820--14388	203	2.8	203	92	3	934	41	4	16	38	1.68
15090--15341	48	4.9	50	90	6	332	48	6	18	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15084--15341	103	2.5	100	85	11	335	48	6	18	25	1.73
15350--15415	31	2.1	31	86	8	89	46	7	19	25	1.76
15492--15545	21	2.6	21	78	0	63	51	1	22	24	1.57
15477--15601	57	2.2	57	81	7	139	56	1	22	20	1.51
15526--15646	35	3.4	35	88	4	163	55	2	23	19	1.55
15533--15601	28	2.4	29	76	7	70	59	1	21	17	1.45
15533--15652	15	8.4	14	67	15	50	56	2	23	17	1.53
15619--15669	22	2.3	22	86	0	66	58	1	19	19	1.48
15775--15865	21	4.3	21	78	2	94	53	6	19	19	1.66
15729--15835	56	1.9	56	82	0	133	49	9	20	20	1.76
15703--15857	77	2.0	79	85	2	215	50	7	20	21	1.72
15777--15877	42	2.4	43	76	5	116	51	6	20	20	1.70
15939--15985	13	3.5	13	72	16	51	61	0	25	12	1.31
15930--15992	27	2.3	28	83	5	94	61	0	20	17	1.34
16696--16776	21	4.2	21	65	20	59	40	6	13	39	1.70
16692--17302	56	10.9	56	95	2	1100	39	6	16	37	1.75
16692--17302	167	3.6	167	95	2	1098	39	6	16	37	1.75
16692--17302	223	2.7	224	96	1	1107	39	6	16	37	1.75
18336--18621	50	5.8	50	79	5	287	36	17	27	17	1.93
18336--18621	100	2.9	100	80	1	317	36	17	27	17	1.93
18637--19495	41	19.8	45	73	17	423	38	21	25	14	1.91
18721--19059	136	2.6	128	84	8	439	40	21	25	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18637--19566	40	21.8	40	73	16	487	38	21	26	14	1.91
19020--19252	94	2.5	94	81	6	249	39	21	23	15	1.92
19376--19524	39	4.0	36	77	12	124	36	21	27	14	1.93
19164--19524	169	2.2	163	81	9	412	36	21	27	15	1.93
19385--19566	75	2.4	77	83	7	210	36	22	28	12	1.91
27512--27550	6	6.7	6	88	11	55	0	25	2	71	0.98
32137--32178	19	2.3	18	84	8	57	61	0	4	33	1.17
32142--32178	19	2.0	19	89	5	58	64	0	2	32	1.07
32636--32724	45	2.0	43	89	6	135	39	22	4	33	1.74
33670--33741	31	2.3	31	77	13	85	61	9	4	25	1.45
33968--33994	2	13.5	2	100	0	54	48	0	0	51	1.00
34924--35033	48	2.4	46	89	4	159	44	7	10	37	1.67
35324--35376	24	2.2	25	96	3	99	47	18	5	28	1.72
36472--36536	31	2.1	31	91	0	103	35	30	15	18	1.92
37347--37378	2	16.0	2	93	0	55	46	3	0	50	1.17
39522--39605	41	2.0	41	100	0	168	51	9	9	29	1.66

Tables:   1

The End!