genome.fa.s12726.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012726.1 Corchorus capsularis cultivar CVL-1 contig12747, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44900

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11843--12034	22	8.8	22	71	15	67	20	20	5	52	1.67
11846--11967	29	4.1	29	71	13	79	21	18	5	54	1.65
12006--12165	35	4.7	35	67	21	124	21	20	5	52	1.65
12041--12382	22	16.1	21	76	13	235	21	21	5	51	1.67
11861--12325	100	4.5	100	83	7	508	21	20	5	52	1.66
12136--12208	15	4.9	15	68	17	53	21	16	5	56	1.61
12149--12382	87	2.7	88	85	5	289	22	20	5	51	1.67
12398--12490	40	2.3	42	87	7	129	21	18	6	53	1.66
12419--12505	41	2.2	38	76	15	86	21	19	6	51	1.70
13297--13321	2	12.5	2	100	0	50	52	0	0	48	1.00
22568--22932	156	2.3	155	77	10	368	34	19	15	30	1.93
24814--24868	12	4.5	12	88	4	83	34	12	23	29	1.92
24818--24865	25	2.0	24	91	4	78	35	10	25	29	1.89
29284--29336	24	2.2	25	93	3	90	50	20	22	5	1.69
30228--30282	10	5.5	10	80	0	56	40	16	10	32	1.83
30228--30307	20	4.0	20	77	6	72	41	15	12	31	1.84
30225--30282	30	1.9	30	92	0	98	37	17	10	34	1.84
32488--32637	75	2.0	75	100	0	300	25	29	16	29	1.96
44262--44335	13	5.2	13	76	20	58	39	8	13	39	1.74
44256--44320	33	2.0	33	93	0	112	38	9	16	35	1.81
44299--44335	13	2.8	13	100	0	74	40	8	5	45	1.56
44333--44369	3	13.0	3	83	11	51	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44666--44693	6	4.7	6	100	0	56	71	14	0	14	1.15

Tables:   1

The End!