genome.fa.s12728.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012728.1 Corchorus capsularis cultivar CVL-1 contig12749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39247

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144--185	12	3.2	13	87	12	59	71	0	11	16	1.14
144--185	14	3.1	14	90	6	61	71	0	11	16	1.14
1220--1266	24	2.0	24	86	0	67	29	25	2	42	1.67
1244--1385	58	2.4	58	84	4	180	21	23	11	43	1.84
1370--1637	22	12.2	22	73	15	101	27	20	6	44	1.76
1469--1593	30	4.2	30	74	14	89	28	19	7	45	1.76
1446--1514	8	9.1	8	72	12	56	26	14	10	49	1.75
1500--1666	36	4.8	35	74	10	128	29	21	5	43	1.76
1570--1937	8	50.2	8	68	19	92	31	22	5	41	1.76
1603--1937	22	15.2	22	69	18	116	31	22	5	41	1.75
1574--1916	58	5.9	58	80	4	379	31	22	4	41	1.75
1611--1847	36	6.4	36	79	9	181	32	21	4	41	1.74
1821--1915	36	2.6	36	80	8	75	30	24	5	40	1.77
1821--2020	104	1.9	103	85	9	273	30	23	6	40	1.79
1951--1999	22	2.3	21	89	3	71	32	18	8	40	1.80
1843--1998	82	1.9	82	86	2	224	30	21	6	41	1.78
1989--2042	22	2.5	22	85	11	69	24	24	9	42	1.83
2033--2065	14	2.4	14	94	0	57	30	15	3	51	1.58
15898--15929	11	2.9	11	90	0	55	37	0	18	43	1.51
15898--15957	22	2.9	22	76	19	65	41	3	18	36	1.67
15908--15945	19	2.1	18	90	5	58	44	2	21	31	1.66
17291--17321	6	5.3	6	96	3	55	35	0	12	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17339--17368	15	2.0	15	93	0	51	13	10	6	70	1.34
18644--18674	13	2.4	13	100	0	62	41	12	32	12	1.81
19000--19030	6	5.3	6	96	3	55	35	0	12	51	1.40
23726--23866	69	2.0	71	91	4	232	31	20	12	34	1.90
23957--24044	32	2.8	32	91	0	140	14	10	36	38	1.80
23939--24044	17	6.5	17	72	8	76	14	9	36	39	1.78
24188--24249	16	3.9	16	81	8	63	11	11	25	51	1.71
29940--29964	12	2.1	12	100	0	50	48	0	0	52	1.00
30775--30806	16	2.0	16	100	0	64	31	0	18	50	1.48
38741--38807	32	2.1	31	86	8	91	28	20	2	47	1.65
38751--38814	32	2.0	32	85	11	87	31	18	3	46	1.65
38907--38983	38	2.1	36	88	7	111	14	15	10	59	1.60
39120--39157	19	2.0	20	85	15	53	28	5	2	63	1.30

Tables:   1

The End!