Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012729.1 Corchorus capsularis cultivar CVL-1 contig12750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70985

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24--584
22
25.7
22
67
12
167
38
10
14
36
1.81
24--584
44
12.8
44
67
13
194
38
10
14
36
1.81
3528--3602
36
2.1
36
89
0
114
25
9
18
46
1.79
6889--6934
15
3.1
15
78
9
51
63
2
0
34
1.07
7827--7858
15
2.1
15
100
0
64
18
12
40
28
1.87
9124--9169
22
2.0
23
87
4
67
41
26
17
15
1.88
10742--10815
16
4.7
16
77
3
87
35
33
21
9
1.86
16971--17012
17
2.5
17
92
3
68
61
7
7
23
1.47
22144--22181
16
2.4
16
87
12
53
7
15
39
36
1.77
27488--27514
2
13.5
2
100
0
54
48
0
0
51
1.00
31204--31363
31
5.5
31
78
13
149
17
21
26
34
1.95
31252--31354
53
1.9
53
90
0
161
17
18
26
37
1.93
35515--35590
38
1.9
39
89
5
118
40
3
21
34
1.71
35558--35590
15
2.2
15
94
0
57
42
3
21
33
1.68
35520--35588
25
2.6
25
76
15
68
42
2
20
34
1.67
35262--35814
305
1.8
305
99
0
1088
37
10
22
30
1.87
39607--39826
109
2.0
109
88
1
325
32
21
20
25
1.97
41486--41531
22
2.1
22
83
0
56
39
26
13
21
1.90
41673--41712
20
2.0
20
85
4
55
15
10
27
47
1.77
43082--43240
46
3.5
46
70
17
159
36
5
21
37
1.75
50549--50623
26
2.9
26
82
4
80
24
20
20
36
1.95
51453--51479
6
4.5
6
100
0
54
55
14
0
29
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51476--51509
12
2.7
13
95
4
61
61
8
8
20
1.52
51476--51515
12
3.2
12
86
6
53
62
10
7
20
1.50
52419--52443
10
2.5
10
100
0
50
24
8
20
48
1.76
57956--57989
12
2.7
13
90
4
52
58
8
11
20
1.59
58899--58923
10
2.5
10
100
0
50
24
8
20
48
1.76
62727--62761
18
1.9
18
88
0
52
74
2
22
0
0.95
65772--65822
14
3.8
13
82
7
57
39
7
13
39
1.74
65762--65829
27
2.5
28
80
4
77
36
8
16
38
1.80
68121--68353
54
4.3
54
86
1
288
30
16
21
31
1.95
68121--68353
108
2.1
109
86
2
326
30
16
21
31
1.95
68361--68599
35
6.8
35
83
5
268
22
16
27
33
1.95
68573--69371
90
8.9
90
85
3
876
24
16
26
32
1.96
68582--69379
361
2.2
357
82
3
951
24
16
25
33
1.96
69719--69785
27
2.5
27
77
0
71
22
16
20
40
1.91

Tables:   1

The End!