genome.fa.s12730.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012730.1 Corchorus capsularis cultivar CVL-1 contig12751, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110939

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2762--2937	16	11.1	16	66	13	69	55	7	21	14	1.65
2963--2995	14	2.3	15	85	15	52	48	6	24	21	1.72
2949--3038	36	2.5	35	89	3	135	52	5	21	21	1.67
2991--3024	14	2.3	15	90	5	52	55	5	14	23	1.61
3062--3108	21	2.2	20	79	17	51	48	6	23	21	1.72
3160--3222	27	2.3	28	81	5	85	63	0	19	17	1.31
4469--4502	18	1.9	18	88	5	52	5	20	11	61	1.50
11578--11648	27	2.6	27	100	0	142	16	16	23	42	1.89
17287--17322	18	2.0	18	88	0	54	30	22	11	36	1.89
17394--17521	35	3.7	35	82	6	136	28	20	23	28	1.99
18637--18677	8	5.0	9	77	22	54	48	0	43	7	1.30
18637--18677	16	2.6	16	100	0	82	48	0	43	7	1.30
20318--20412	39	2.6	36	73	18	97	48	6	16	28	1.71
20425--20631	111	1.9	112	91	3	346	57	7	20	14	1.62
20456--20631	16	11.1	16	68	13	87	56	7	21	14	1.63
20640--20675	14	2.5	15	86	13	58	50	5	25	19	1.69
20643--20725	36	2.3	35	89	2	121	51	8	19	20	1.72
20671--20704	14	2.3	15	90	5	52	55	5	14	23	1.61
20686--20776	21	4.3	21	77	2	94	51	7	20	19	1.71
20686--20788	42	2.5	41	77	4	116	49	7	22	20	1.74
24741--24782	3	14.3	3	85	9	52	69	2	2	26	1.13
29278--29405	35	3.7	35	80	10	138	28	20	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36477--36511	18	1.9	18	88	0	52	74	2	22	0	0.95
36480--36528	25	2.0	25	84	8	64	75	2	18	4	1.06
49595--49707	6	18.8	6	70	21	69	1	21	0	76	0.87
49595--49656	20	3.2	18	73	22	54	0	20	0	79	0.74
49608--49640	15	2.2	15	94	0	57	0	21	0	78	0.75
49610--49708	17	5.8	17	74	17	82	2	21	0	76	0.88
49596--49706	13	8.8	12	71	21	68	1	21	0	76	0.88
49595--49707	51	2.2	51	82	16	137	1	21	0	76	0.87
49595--49707	26	4.4	26	76	15	103	1	21	0	76	0.87
49761--49979	47	4.7	47	92	0	357	35	21	22	21	1.96
50102--50465	69	5.3	69	79	6	351	26	18	27	27	1.98
50708--50768	29	2.1	29	93	0	104	29	11	18	40	1.85
51389--51430	17	2.4	18	80	11	52	4	19	0	76	0.96
51745--51798	26	2.0	27	89	3	83	14	22	0	62	1.31
51755--52356	298	2.0	298	99	0	1177	21	22	15	40	1.91
52508--52611	45	2.3	45	93	1	174	34	19	6	39	1.78
52629--52684	20	2.8	20	86	7	80	1	23	0	75	0.90
52632--52688	10	5.5	11	72	12	50	1	21	0	77	0.86
58060--58112	25	2.1	25	85	0	70	62	11	15	11	1.55
58176--58222	23	2.1	23	92	4	78	53	4	21	21	1.63
58544--58619	8	9.5	8	80	5	82	47	1	21	30	1.59
58529--58622	24	4.0	23	82	6	73	46	2	22	28	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58758--59050	8	40.0	7	65	23	83	45	4	20	30	1.70
58758--59013	14	17.1	14	68	16	92	44	4	20	30	1.72
58752--58901	22	6.9	22	79	10	141	44	4	21	30	1.70
58573--58792	100	2.2	99	79	11	220	44	8	21	25	1.80
58799--59019	30	7.5	30	68	16	122	44	4	19	30	1.72
58788--59041	44	5.8	42	76	11	208	45	4	19	30	1.71
58788--58945	36	4.4	35	70	15	92	45	5	18	30	1.71
58781--59051	22	12.3	22	74	13	163	45	4	19	30	1.71
58758--59055	14	20.5	13	68	21	86	45	4	20	29	1.71
59004--59062	30	2.0	30	86	6	84	49	5	18	27	1.68
59177--59250	24	3.0	24	82	4	76	44	5	21	28	1.74
59252--59295	16	2.8	16	89	6	63	52	0	13	34	1.41
59212--59324	52	2.2	53	80	7	124	49	2	18	29	1.61
59271--59364	37	2.5	37	89	3	145	45	2	23	28	1.64
59345--59391	16	2.9	16	75	12	51	42	2	25	29	1.67
59346--59401	24	2.3	25	79	11	64	41	1	26	30	1.66
59422--59465	16	2.7	16	86	10	54	40	2	25	31	1.68
59611--59645	17	2.1	17	88	0	52	45	8	17	28	1.77
60386--60431	17	2.8	16	83	6	65	13	13	0	73	1.09
60388--60447	25	2.4	25	88	2	86	13	11	0	75	1.06
60385--60431	8	5.8	8	85	5	67	12	12	0	74	1.07
60409--60447	12	3.2	12	81	3	51	12	10	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61118--61182	33	2.0	33	90	0	103	36	15	9	38	1.79
65312--65714	39	10.8	39	85	8	472	43	10	19	25	1.83
65312--65714	79	5.4	77	87	6	473	43	10	19	25	1.83
65695--65780	32	2.7	32	92	1	136	39	6	23	30	1.81
69178--69207	11	2.6	11	94	5	51	90	0	10	0	0.47
69178--69218	14	3.0	14	89	3	57	82	0	17	0	0.66
70036--70106	6	12.2	6	78	11	76	80	1	18	0	0.79
70036--70113	25	3.1	25	85	7	104	80	1	17	0	0.77
70036--70113	27	3.0	26	90	3	113	80	1	17	0	0.77
71754--71853	43	2.3	43	82	3	112	24	25	27	24	2.00
71778--71853	22	3.5	22	78	7	84	26	23	27	22	1.99
71752--71833	21	3.9	21	80	3	83	21	26	25	25	2.00
73351--73494	49	2.9	49	92	1	225	52	5	17	24	1.65
76385--76477	39	2.4	39	96	0	168	51	4	17	26	1.63
76448--76986	39	13.9	39	89	7	832	43	10	20	24	1.83
76448--76986	122	4.6	121	89	7	818	43	10	20	24	1.83
76882--77082	35	5.9	33	76	8	91	43	9	20	25	1.83
79543--79576	15	2.3	15	90	10	52	26	5	5	61	1.42
80231--80271	21	2.0	21	85	0	55	26	36	19	17	1.94
81982--82067	45	1.9	45	83	4	111	38	16	11	33	1.85
81938--82518	22	27.0	22	67	15	154	36	15	8	39	1.79
82401--82467	19	3.5	19	83	6	73	25	16	10	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82556--82768	66	3.2	65	78	10	184	36	12	9	41	1.75
82624--82749	44	2.8	43	78	13	114	38	11	8	42	1.72
82690--82728	21	2.0	19	85	14	53	41	7	5	46	1.55
82556--82918	22	16.3	22	66	19	98	35	14	9	39	1.79
82989--83142	44	3.5	43	83	5	130	38	16	11	33	1.85
83036--83142	22	4.9	22	91	0	169	35	16	14	33	1.89
82982--83142	68	2.4	66	80	4	171	38	18	11	32	1.86
83036--83165	22	5.9	22	88	1	118	36	17	13	33	1.88
83038--83165	66	1.9	66	82	6	161	36	17	13	32	1.88
83247--83314	31	2.2	31	91	2	109	51	4	13	30	1.60
89919--89947	6	4.8	6	100	0	58	34	13	51	0	1.42
90616--90649	17	2.0	17	100	0	68	52	5	23	17	1.66
93431--93488	21	2.7	22	75	5	64	29	6	12	51	1.65
95026--95056	2	15.5	2	100	0	62	51	0	0	48	1.00
109987--110022	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!