Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012734.1 Corchorus capsularis cultivar CVL-1 contig12755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5874
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:4010 original size:19 final size:19

Alignment explanation


    Indices: 3972--4007  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       3962 TGAAGATTTC

                               
       3972 TTGAAGATAATTTGAAAAT
          1 TTGAAGATAATTTGAAAAT

                    *         
       3991 TTGAAGATCA-TTGAAAA
          1 TTGAAGATAATTTGAAAA

       4008 ATTATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33


Consensus pattern (19 bp):   
TTGAAGATAATTTGAAAAT
Done.