genome.fa.s12737.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012737.1 Corchorus capsularis cultivar CVL-1 contig12758, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92652

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105--157	26	2.1	26	85	3	72	18	20	13	47	1.82
4113--4210	38	2.6	38	90	1	144	52	7	14	26	1.67
4115--4243	38	3.4	37	85	4	141	51	6	15	26	1.69
4251--4491	16	13.4	16	66	21	97	38	4	17	39	1.71
4263--4542	19	15.1	19	67	21	114	37	5	18	38	1.73
4267--4664	56	7.1	56	94	1	663	37	6	18	37	1.76
4617--4772	35	4.4	35	71	8	118	41	11	14	33	1.81
4788--4914	36	3.4	35	68	24	105	46	9	11	32	1.73
4814--4957	43	3.5	42	69	24	112	45	8	13	33	1.73
4789--4959	79	2.2	79	94	1	299	46	8	12	32	1.72
8750--8781	16	2.0	16	93	0	55	68	0	3	28	1.04
8755--8781	13	2.1	13	100	0	54	70	0	0	29	0.88
9267--9402	38	3.6	38	90	1	193	52	6	13	27	1.65
9298--9355	19	3.1	19	67	7	55	53	5	10	31	1.57
9267--9424	76	2.1	77	86	4	221	52	6	13	27	1.65
9269--9425	38	4.1	37	87	3	170	52	6	14	27	1.65
9443--9741	16	16.6	16	66	21	105	38	5	17	39	1.72
9459--9968	56	9.1	56	92	0	824	37	5	17	38	1.74
9921--10076	35	4.4	35	73	8	127	41	10	14	33	1.80
10886--10948	24	2.6	24	100	0	126	20	26	26	25	1.99
16508--16571	25	2.8	22	75	13	56	18	6	9	65	1.42
25151--25188	19	2.1	18	90	5	58	42	7	21	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28432--28488	17	3.3	17	92	4	96	28	19	19	33	1.96
28605--28640	19	1.9	18	88	5	54	30	25	2	41	1.69
29845--29908	34	1.9	33	90	3	101	46	7	14	31	1.72
37535--37570	19	1.9	18	88	5	54	30	25	2	41	1.69
45097--45139	16	2.6	16	85	7	50	67	0	20	11	1.22
46979--47048	35	2.0	35	100	0	140	31	14	14	40	1.86
70911--70947	19	2.0	18	89	5	56	32	21	5	40	1.76
74550--74594	13	3.5	13	87	3	65	66	0	4	28	1.11
74548--74593	19	2.4	19	88	0	74	67	0	2	30	1.03
74550--74590	6	6.7	6	91	5	64	70	0	2	26	0.99
81681--81751	18	4.2	18	72	24	73	18	30	19	30	1.96
89014--89069	27	2.1	27	90	6	87	19	25	32	23	1.98
89142--89341	22	9.2	22	68	16	71	40	7	15	37	1.74
89148--89297	23	6.9	22	74	15	89	38	7	16	38	1.77
89151--89295	64	2.2	65	82	12	165	37	7	16	37	1.77
91238--91363	44	2.8	44	76	1	135	35	12	15	36	1.85
91326--91368	22	2.0	22	85	0	59	37	6	18	37	1.78
91305--91429	66	1.9	66	85	6	173	36	8	14	40	1.75
91412--91457	22	2.1	22	83	0	56	32	2	21	43	1.65
91521--91597	22	3.5	22	66	16	52	37	9	10	42	1.71

Tables:   1

The End!