Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01001274.1 Corchorus capsularis cultivar CVL-1 contig01274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8807

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2616--2672
19
3.0
20
76
7
73
28
8
0
63
1.24
2645--2698
12
4.2
12
74
21
56
33
3
0
62
1.12
2746--2851
22
4.7
22
72
11
90
34
10
16
37
1.83
2747--2833
44
2.0
43
82
6
104
35
10
18
35
1.85
2917--3290
22
16.9
21
69
16
127
39
9
17
33
1.82
3083--3161
21
3.5
22
78
13
79
43
10
13
32
1.78
3149--3314
44
3.8
43
74
7
111
42
10
14
32
1.79
3396--3625
44
5.3
45
71
15
146
42
9
14
33
1.78
3391--3624
22
10.9
22
68
16
87
43
8
14
33
1.77
3446--3598
82
1.9
83
80
6
186
44
6
15
33
1.72
3541--3802
22
11.8
22
70
13
108
34
9
16
39
1.81
3800--3840
11
3.5
12
80
16
50
68
2
7
21
1.26
3784--3840
22
2.5
23
80
2
71
61
5
8
24
1.46
3828--3891
22
2.9
22
76
0
74
39
12
14
34
1.83
6816--6878
27
2.2
29
88
5
94
30
1
0
68
0.99
6856--6887
16
2.0
16
93
0
55
28
0
0
71
0.86
6892--6952
31
2.0
31
100
0
122
39
16
14
29
1.88

Tables:   1

The End!