Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012740.1 Corchorus capsularis cultivar CVL-1 contig12761, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39746

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1061--1127
34
2.0
34
93
0
116
26
25
19
28
1.99
6804--7137
167
2.0
168
95
0
607
23
22
16
37
1.94
15596--15634
6
6.5
6
100
0
78
53
15
0
30
1.42
15631--15664
12
2.7
13
90
4
52
58
8
11
20
1.59
16575--16600
10
2.6
10
100
0
52
23
7
19
50
1.73
18449--18485
9
3.8
10
86
13
51
13
0
5
81
0.86
29305--29363
30
2.0
30
86
6
84
23
30
15
30
1.95
29754--29860
33
3.2
33
94
0
187
40
17
8
33
1.80
29754--29881
66
1.9
66
85
3
177
41
19
7
31
1.80
33278--33337
22
2.9
22
76
19
65
43
3
18
35
1.67
33288--33325
19
2.1
18
90
5
58
44
2
21
31
1.66
34674--34722
6
8.3
6
88
2
73
38
0
14
46
1.44
35041--35256
110
2.0
110
95
1
389
31
9
18
41
1.82
36998--37065
32
2.1
33
86
5
93
27
8
14
48
1.74

Tables:   1

The End!