genome.fa.s12741.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012741.1 Corchorus capsularis cultivar CVL-1 contig12762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18276

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417--489	32	2.3	31	81	6	83	45	6	26	21	1.77
596--718	32	3.6	32	75	14	111	51	2	25	21	1.60
651--754	40	2.6	40	95	0	181	55	2	19	22	1.56
752--785	16	2.1	17	88	5	52	58	2	20	17	1.51
651--770	40	3.1	39	89	8	156	55	3	20	21	1.58
738--815	37	2.1	37	88	4	113	56	3	20	19	1.57
797--879	32	2.5	33	83	13	107	53	4	19	22	1.64
853--906	26	2.1	26	93	6	92	53	3	14	27	1.58
891--955	21	3.0	21	77	2	67	55	4	21	18	1.60
908--962	7	7.9	7	79	0	56	58	3	21	16	1.54
891--1043	28	5.5	28	70	16	95	53	4	23	18	1.63
901--1024	14	9.0	14	74	13	114	54	5	21	18	1.64
1004--1085	35	2.3	35	83	4	103	48	3	28	19	1.65
1033--1145	22	5.2	22	82	3	140	50	4	23	22	1.67
1033--1209	44	4.3	44	77	13	153	50	5	22	22	1.68
1148--1209	21	2.9	21	85	2	70	50	6	20	22	1.71
1111--1179	35	1.9	36	88	2	104	46	7	23	23	1.77
1280--1343	27	2.2	29	78	13	78	64	0	21	14	1.29
4065--4122	14	4.3	13	82	8	71	41	8	12	37	1.73
4065--4122	27	2.2	26	84	12	73	41	8	12	37	1.73
6687--6847	45	3.6	45	94	0	277	28	22	17	31	1.96
7261--7328	32	2.1	33	88	5	102	27	7	14	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11055--11090	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!