Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012742.1 Corchorus capsularis cultivar CVL-1 contig12763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11880

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7704--7739
19
1.9
18
88
5
54
33
22
2
41
1.68
8586--8700
32
3.7
30
84
4
115
53
3
26
17
1.60
8618--8700
32
2.6
32
96
0
148
49
3
27
19
1.65
8643--8697
16
3.4
16
76
18
69
56
3
21
18
1.57
8734--8767
16
2.1
17
88
5
52
58
2
20
17
1.51
8676--8797
40
3.2
39
82
14
130
54
3
21
20
1.58
8835--8888
26
2.1
26
93
6
92
53
3
14
27
1.58
8890--8945
7
7.9
7
84
4
67
60
1
21
16
1.44
8873--9128
22
12.0
21
68
17
120
51
4
23
20
1.64
8873--8945
29
2.5
28
84
6
92
58
2
20
17
1.50
8875--8947
7
10.1
7
80
4
56
60
2
19
17
1.48
8959--9007
14
3.5
14
83
10
64
48
6
22
22
1.72
8952--9006
28
2.1
25
86
10
74
50
5
21
21
1.68
8987--9068
35
2.3
35
83
4
103
47
3
28
20
1.67
9141--9213
21
3.4
21
74
9
76
52
6
19
21
1.69
9123--9225
42
2.5
41
78
10
127
49
6
21
22
1.72
10085--10113
12
2.4
12
100
0
58
24
31
27
17
1.97

Tables:   1

The End!