Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012744.1 Corchorus capsularis cultivar CVL-1 contig12765, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24243

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
570--655
32
2.7
31
76
7
82
46
6
25
20
1.76
811--889
32
2.4
32
79
14
88
53
5
17
24
1.64
863--916
26
2.1
26
93
6
92
53
3
14
27
1.58
901--965
29
2.2
30
89
5
98
58
3
21
16
1.52
911--1056
14
11.0
14
68
16
87
54
5
21
19
1.64
928--979
22
2.4
22
90
3
88
57
3
21
17
1.55
1037--1117
35
2.3
35
82
4
101
48
3
28
19
1.66
1065--1274
21
10.2
21
71
17
120
49
5
23
21
1.70
1065--1177
22
5.2
22
81
7
133
51
4
23
21
1.66
1172--1274
42
2.5
41
80
4
134
48
6
23
21
1.74
1333--1396
27
2.2
29
83
13
96
64
0
21
14
1.29
7248--7303
29
1.9
29
85
7
78
48
16
12
23
1.80

Tables:   1

The End!