Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012748.1 Corchorus capsularis cultivar CVL-1 contig12769, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74865

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66--234
7
25.0
7
70
15
106
56
2
24
17
1.53
82--165
35
2.4
34
90
5
132
58
2
22
16
1.50
42--323
82
3.5
80
80
9
322
56
2
24
16
1.54
117--256
47
3.0
47
89
6
212
57
2
25
15
1.50
213--338
35
3.6
35
78
9
139
55
3
22
18
1.59
362--428
21
3.1
21
70
10
55
49
7
17
25
1.73
2244--2302
29
2.0
30
93
3
102
38
15
1
44
1.56
4284--4441
82
1.9
84
93
6
279
50
9
12
27
1.71
10134--10506
48
7.7
48
79
6
349
22
28
16
32
1.96
15389--15430
21
2.0
21
90
0
66
28
28
35
7
1.84
16461--16503
22
2.0
22
100
0
86
18
11
32
37
1.87
20059--20100
2
21.0
2
90
0
66
45
0
2
52
1.13
23011--23043
5
6.8
5
89
3
50
87
0
12
0
0.53
23010--23043
10
3.4
10
91
0
59
88
0
11
0
0.52
28590--28708
36
3.4
35
78
17
140
28
16
7
47
1.74
28611--28723
32
3.4
32
76
17
122
28
18
6
46
1.73
28722--29315
35
16.8
35
83
5
691
25
22
10
41
1.85
28722--29311
71
8.3
71
87
4
741
25
22
10
41
1.85
28722--29315
106
5.6
105
86
4
734
25
22
10
41
1.85
29308--29416
11
9.8
11
76
5
94
17
23
7
51
1.70
29313--29410
33
2.9
33
84
3
124
19
22
8
50
1.74
29475--29738
36
7.4
36
87
4
347
28
12
10
47
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29584--29647
20
3.5
20
64
27
50
26
15
7
50
1.71
29492--29738
71
3.5
71
89
3
381
28
12
10
47
1.75
29705--29952
36
6.9
36
73
9
204
25
20
9
43
1.82
29706--29952
69
3.5
69
87
5
307
25
20
9
44
1.81
29964--30075
40
2.8
39
81
6
127
30
16
8
44
1.77
33074--33154
34
2.4
34
100
0
162
48
17
17
17
1.82
33132--33176
22
2.0
22
100
0
90
46
8
22
22
1.79
33197--33240
22
2.0
22
90
0
70
43
11
20
25
1.85
39379--39436
22
2.5
24
86
10
86
12
12
3
72
1.24
39387--39427
12
3.5
12
77
16
50
14
9
2
73
1.19
39412--39461
16
2.9
16
79
8
55
10
10
6
74
1.23
39412--39460
17
2.9
17
81
9
55
10
8
6
75
1.18
41913--42271
179
2.0
179
98
0
691
36
17
23
22
1.95
45710--45759
26
1.9
26
83
0
64
50
12
20
18
1.78
50989--51578
30
19.7
30
85
4
683
31
18
18
31
1.95
54936--55251
126
2.6
122
79
9
333
23
19
18
37
1.94
55746--55779
14
2.4
14
90
0
50
82
0
14
2
0.79
60569--60631
30
2.1
30
88
5
92
20
33
15
30
1.94
62687--62769
34
2.4
34
100
0
166
63
8
6
21
1.44
62699--62780
34
2.6
30
88
9
112
65
7
6
20
1.39
66274--66302
14
2.1
14
100
0
58
27
6
27
37
1.82
66272--66304
14
2.5
13
90
9
57
30
6
30
33
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66610--66648
4
9.8
4
100
0
78
74
0
25
0
0.82
71650--71675
13
2.0
13
100
0
52
30
15
15
38
1.88

Tables:   1

The End!