Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012749.1 Corchorus capsularis cultivar CVL-1 contig12770, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6585

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
305--349
20
2.4
18
85
7
54
35
2
2
60
1.22
322--357
18
1.9
18
88
5
54
41
5
0
52
1.24
668--823
74
2.1
74
94
3
271
36
5
17
40
1.72
1335--1398
27
2.2
29
81
13
87
15
21
0
62
1.32
1490--1561
35
2.0
36
92
7
121
22
22
5
50
1.70
1517--1682
22
8.0
22
72
21
119
22
21
4
51
1.66
1486--1677
101
1.9
100
92
3
323
22
20
5
52
1.66
1561--1704
57
2.5
57
86
3
184
22
20
4
53
1.62
1589--1666
35
2.2
35
88
4
111
21
21
5
51
1.67
1794--1847
26
2.1
26
89
6
83
27
16
3
51
1.61
1800--1855
26
2.2
26
83
6
69
26
19
3
50
1.64
1834--1897
32
2.0
33
87
3
94
26
18
4
50
1.67
1939--2036
40
2.4
41
85
10
137
22
20
6
51
1.69
5709--5805
27
3.6
27
81
4
88
43
22
16
17
1.88
5766--5817
27
1.9
27
92
0
86
40
28
19
11
1.86

Tables:   1

The End!