Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012752.1 Corchorus capsularis cultivar CVL-1 contig12773, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2372
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.29


Found at i:601 original size:21 final size:22

Alignment explanation


    Indices: 568--609  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        558 CTAAAATCTC

                                  
        568 AATTAGGGCCCTGAACTTTTCA
          1 AATTAGGGCCCTGAACTTTTCA

                  *              
        590 AATTAGTG-CCTGAACTTTTC
          1 AATTAGGGCCCTGAACTTTTC

        610 GATTTGGATC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36


Consensus pattern (22 bp):   
AATTAGGGCCCTGAACTTTTCA

Found at i:1864 original size:15 final size:15

Alignment explanation


    Indices: 1844--1872  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       1834 AGGGTTAGGG

                           
       1844 AATTATTAAAGTCCA
          1 AATTATTAAAGTCCA

                          
       1859 AATTATTAAAGTCC
          1 AATTATTAAAGTCC

       1873 TCAGACCTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34


Consensus pattern (15 bp):   
AATTATTAAAGTCCA
Done.