genome.fa.s12753.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012753.1 Corchorus capsularis cultivar CVL-1 contig12774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54769

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898--972	37	2.0	37	97	0	141	41	10	12	36	1.77
2734--2802	33	2.1	33	86	2	95	26	20	27	26	1.99
13031--13071	15	2.7	15	84	0	55	43	17	24	14	1.86
13114--13148	15	2.3	15	85	0	52	25	37	17	20	1.94
14507--14545	19	2.0	20	95	5	71	48	15	10	25	1.76
18249--18299	21	2.4	22	80	3	59	7	25	1	64	1.31
20854--20904	26	2.0	26	88	0	75	35	19	7	37	1.81
25043--25082	21	1.9	21	94	0	71	45	0	15	40	1.46
25012--25117	56	1.9	56	96	0	194	37	6	16	38	1.75
25064--25187	35	3.5	35	97	0	230	36	8	16	38	1.79
25169--25210	21	2.0	21	90	0	66	50	2	11	35	1.52
25012--25236	91	2.5	89	81	7	231	38	7	16	37	1.77
26204--26253	25	2.0	25	92	0	82	42	8	20	30	1.80
26440--26487	26	1.9	26	91	8	82	45	4	16	33	1.67
26830--26924	50	1.9	50	86	4	138	24	26	10	38	1.87
26954--27292	50	6.7	50	82	1	363	26	25	12	35	1.91
27053--27141	27	3.4	27	67	6	83	29	26	10	33	1.89
27406--27614	59	3.5	60	82	5	221	24	21	14	40	1.90
28789--28820	8	4.0	8	95	0	55	25	15	21	37	1.93
29572--29605	3	11.7	3	93	6	61	0	32	0	67	0.91
34762--34872	40	2.8	40	91	1	179	37	15	15	31	1.88
35729--35772	20	2.0	20	87	12	61	0	34	2	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37110--37149	21	2.0	20	85	5	53	45	12	0	42	1.42
38538--38582	14	3.1	14	87	3	54	40	0	0	60	0.97
38642--38877	112	2.1	112	96	1	440	32	12	17	37	1.87
40145--40302	78	2.0	78	86	2	219	23	25	19	31	1.98
40521--41099	291	2.0	290	97	0	1104	42	19	12	25	1.86
41989--42021	14	2.3	15	94	5	59	81	0	0	18	0.68
42225--42257	14	2.3	15	94	5	59	81	0	0	18	0.68
42497--42643	76	1.9	76	94	0	258	34	18	24	23	1.96
45774--45842	29	2.4	29	90	2	104	15	10	26	47	1.77
50057--50128	30	2.4	31	83	6	103	47	9	18	25	1.78
50120--50179	22	2.7	23	89	5	81	51	5	21	21	1.66
50176--50320	55	2.6	55	88	0	200	48	6	20	25	1.72
50396--50439	22	1.9	24	90	9	74	43	4	20	31	1.72
50597--50824	21	11.4	20	67	18	79	50	6	21	21	1.71
50680--50719	16	2.6	16	92	4	64	55	5	20	20	1.62
50678--50748	38	1.9	36	86	8	99	53	5	19	21	1.65
50691--50740	15	3.3	15	86	5	57	56	6	16	22	1.62
50707--50740	14	2.3	15	90	5	52	55	5	14	23	1.61
50876--50952	27	2.7	27	78	9	84	61	2	20	15	1.46

Tables:   1

The End!