Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012754.1 Corchorus capsularis cultivar CVL-1 contig12775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15085

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3424--3852
48
8.9
48
88
1
588
29
17
30
22
1.96
4975--5025
25
2.0
27
85
14
72
25
13
13
47
1.80
8386--8729
71
4.7
70
78
10
332
46
6
18
28
1.73
8386--8576
34
5.4
33
68
21
120
47
5
17
29
1.69
8486--8733
37
6.7
36
75
15
170
46
6
18
28
1.74
9179--9297
40
2.9
40
79
9
134
47
4
23
24
1.69
8992--9415
21
20.7
20
68
18
178
50
4
23
20
1.67
9450--9527
27
2.9
27
81
14
81
62
2
20
14
1.42
10485--10550
18
3.7
18
91
0
105
43
21
10
24
1.83
13489--13519
15
2.1
15
100
0
62
25
35
0
38
1.56
14598--14644
24
2.0
23
83
4
58
25
40
8
25
1.84

Tables:   1

The End!