Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012760.1 Corchorus capsularis cultivar CVL-1 contig12781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14486

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4449--4662
73
3.0
71
85
8
240
43
9
21
25
1.82
4453--4660
109
1.9
106
80
9
240
43
9
22
25
1.82
4453--4660
36
5.7
35
79
10
204
43
9
22
25
1.82
4724--4828
36
2.9
36
85
2
138
47
12
13
26
1.78
4888--4940
11
5.0
11
86
9
83
56
9
24
9
1.60
4892--4934
20
2.2
19
95
4
77
58
9
23
9
1.58
4934--5794
36
23.7
36
77
9
539
43
10
21
23
1.84
5235--5358
41
3.0
41
93
1
203
44
11
21
22
1.84
5486--5527
11
4.0
11
87
12
70
54
9
26
9
1.63
5490--5527
20
1.9
20
100
0
76
52
10
26
10
1.68
5798--5921
32
3.8
32
81
13
162
50
6
16
27
1.69
14203--14250
13
3.6
13
73
15
53
12
25
0
62
1.30
14206--14278
27
2.6
28
83
10
80
15
23
0
61
1.33
14324--14414
21
4.3
21
83
2
112
21
19
5
52
1.66
14322--14473
42
3.6
42
75
14
136
22
19
5
53
1.65
14311--14414
21
4.9
20
77
11
102
22
22
5
50
1.70

Tables:   1

The End!