Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012761.1 Corchorus capsularis cultivar CVL-1 contig12782, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8234
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33


Found at i:1146 original size:20 final size:20

Alignment explanation


    Indices: 1121--1159  Score: 69
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1111 AAAAAGACCA

                                
       1121 CCAATTTGCAAATCAAATGT
          1 CCAATTTGCAAATCAAATGT

                    *          
       1141 CCAATTTGTAAATCAAATG
          1 CCAATTTGCAAATCAAATG

       1160 CCTTATATTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31


Consensus pattern (20 bp):   
CCAATTTGCAAATCAAATGT

Found at i:1369 original size:14 final size:14

Alignment explanation


    Indices: 1350--1377  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       1340 TGATAGTAAT

                          
       1350 CTAAATGGACTAAA
          1 CTAAATGGACTAAA

                          
       1364 CTAAATGGACTAAA
          1 CTAAATGGACTAAA

       1378 ATTAATATGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21


Consensus pattern (14 bp):   
CTAAATGGACTAAA
Done.