Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012767.1 Corchorus capsularis cultivar CVL-1 contig12788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55859

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
939--989
18
2.7
19
77
16
54
39
3
7
49
1.51
1437--1810
48
7.7
49
80
5
366
21
28
17
32
1.96
1426--1831
98
4.2
97
77
9
380
20
28
16
34
1.95
10937--10976
17
2.4
18
80
16
50
45
2
0
52
1.14
11109--11144
11
3.3
11
96
0
63
47
5
0
47
1.25
11313--11353
21
2.0
21
100
0
82
9
17
4
68
1.35
14625--14765
70
2.0
70
90
2
221
21
12
14
50
1.77
15867--15919
27
2.0
27
85
7
74
39
9
1
49
1.46
17092--17260
91
1.9
91
88
2
259
31
17
17
33
1.93
20354--20414
31
2.0
31
84
12
81
57
6
14
21
1.60
22542--22572
8
3.9
8
95
0
53
77
6
0
16
0.97
25949--25995
22
2.1
23
92
4
78
12
12
12
61
1.57
25982--26028
24
1.9
25
86
4
69
12
8
23
55
1.64
29690--29804
60
2.0
60
89
3
180
30
22
8
38
1.84
29825--29863
2
19.5
2
89
10
62
48
2
0
48
1.15
30244--30294
2
27.5
2
81
15
65
52
0
0
47
1.00
30378--30461
9
9.8
9
76
14
72
55
0
1
42
1.07
30381--30460
7
12.0
7
73
17
64
56
0
1
42
1.07
30368--30454
27
3.0
27
76
23
97
57
0
1
41
1.06
30378--30458
34
2.4
34
91
0
135
56
0
1
41
1.07
32247--32278
14
2.3
14
94
0
55
81
0
0
18
0.70
34336--34661
178
1.8
178
80
2
395
33
15
15
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34986--35023
10
3.8
10
100
0
76
18
18
0
63
1.32
37090--37127
16
2.4
16
87
12
53
7
15
39
36
1.77
38422--38497
16
4.8
16
72
3
64
7
10
38
43
1.68
38437--38496
31
1.9
31
93
0
102
6
8
40
45
1.61
40459--40612
78
2.0
78
90
0
245
51
1
12
35
1.48
41152--41239
32
2.7
33
80
7
108
20
43
26
10
1.83
45618--45673
24
2.3
24
84
0
67
16
21
25
37
1.93
47778--47932
75
2.0
80
92
6
266
33
11
5
49
1.61
54073--54101
6
4.8
6
100
0
58
34
13
17
34
1.89

Tables:   1

The End!