Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012769.1 Corchorus capsularis cultivar CVL-1 contig12790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7526
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:6060 original size:5 final size:5

Alignment explanation


    Indices: 6050--6074  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       6040 TTGATTTTAA

                                         
       6050 AAAAT AAAAT AAAAT AAAAT AAAAT
          1 AAAAT AAAAT AAAAT AAAAT AAAAT

       6075 CGTGGCCGTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20


Consensus pattern (5 bp):   
AAAAT

Done.