genome.fa.s12772.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012772.1 Corchorus capsularis cultivar CVL-1 contig12793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49386

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1769--1795	5	5.4	5	100	0	54	18	0	0	81	0.69
1770--1804	15	2.3	15	90	0	52	17	2	2	77	1.02
6203--6725	35	14.7	35	84	5	658	31	18	9	39	1.83
10986--11011	2	13.0	2	100	0	52	50	0	0	50	1.00
16668--16897	115	2.0	115	99	0	451	29	10	21	37	1.88
19489--19530	22	1.9	22	100	0	84	42	16	19	21	1.89
21942--22063	39	3.0	41	77	8	133	22	11	27	38	1.88
25523--25553	4	7.8	4	100	0	62	77	0	22	0	0.77
39142--39468	85	4.0	85	89	3	465	40	12	22	24	1.88
39149--39483	42	8.1	42	85	6	427	40	12	22	24	1.88
39484--39767	37	7.7	36	82	7	331	45	10	18	25	1.80
39484--39767	73	3.8	73	85	5	342	45	10	18	25	1.80
39484--39767	111	2.6	111	92	1	464	45	10	18	25	1.80
39747--39785	18	2.2	18	90	0	60	41	5	20	33	1.74
39710--39823	55	2.1	56	90	8	180	44	7	19	28	1.78
39684--39858	93	1.9	92	90	3	280	45	9	18	26	1.81
39765--39953	37	5.1	37	92	1	299	46	11	18	23	1.82
39637--39897	130	2.0	128	86	5	357	45	9	18	26	1.80
39927--39976	23	2.2	23	89	7	75	50	10	16	24	1.75
40048--40221	41	4.3	40	84	5	217	43	11	24	20	1.85
40226--40328	36	2.8	36	79	10	102	46	11	14	27	1.79
40317--40578	37	7.3	37	78	9	267	43	8	24	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40317--40560	74	3.4	71	83	7	311	43	7	24	24	1.79
40357--40549	65	2.8	67	83	7	237	42	8	24	24	1.82
40392--40592	102	2.0	101	85	2	269	41	7	24	25	1.82
40553--40660	32	3.2	32	81	13	137	38	11	21	28	1.87
40666--40791	37	3.4	38	70	12	120	56	7	11	23	1.61
40630--40857	73	3.1	73	94	0	402	52	8	15	23	1.69
40602--40818	36	6.0	36	72	12	174	48	8	17	25	1.74
43744--43778	17	2.1	17	88	0	52	31	8	14	45	1.75
49297--49386	2	46.0	2	95	4	166	50	0	50	0	1.00

Tables:   1

The End!