Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012774.1 Corchorus capsularis cultivar CVL-1 contig12795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55848

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--1201
41
28.9
41
72
12
666
37
21
26
14
1.92
11--581
81
7.0
81
78
9
502
39
22
24
14
1.91
629--915
76
3.7
76
70
11
204
36
22
28
12
1.90
198--1122
158
5.7
162
78
10
729
36
21
26
14
1.92
1011--1134
47
2.9
39
77
18
140
33
23
27
15
1.95
1044--1201
47
3.4
45
82
7
165
35
23
24
16
1.95
3381--3422
15
2.6
16
85
7
59
9
11
0
78
0.96
5129--5179
26
2.0
25
84
3
66
43
25
15
15
1.86
15955--16059
33
3.2
32
75
5
102
41
19
10
28
1.84
26601--26661
30
2.0
30
93
0
104
18
26
19
36
1.94
28874--28939
30
2.2
30
81
10
73
48
21
7
22
1.75
28896--28951
29
1.9
29
85
7
78
48
17
12
21
1.80
29771--29838
30
2.3
30
92
0
109
27
29
27
14
1.95
30465--30497
11
3.0
11
83
16
50
30
6
18
45
1.73
36361--36394
17
2.0
17
88
0
50
44
8
5
41
1.60
39439--39829
22
17.8
22
74
15
260
18
19
6
55
1.64
39473--39812
43
7.7
42
77
11
263
17
19
6
55
1.64
39427--39769
116
3.0
116
76
11
263
19
19
6
54
1.65
39539--39592
15
3.7
15
73
9
58
16
20
5
57
1.59
39572--39751
7
25.1
7
65
10
51
17
18
6
57
1.60
39673--39751
14
5.7
13
70
12
59
17
18
2
60
1.47
39717--39864
66
2.3
64
80
8
167
18
19
6
55
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40049--40299
55
4.6
55
93
0
421
25
17
7
50
1.72
40295--40356
22
2.8
22
87
4
81
19
22
8
50
1.74
43554--43627
27
2.8
25
75
6
67
37
25
18
17
1.93
44948--44976
2
14.5
2
100
0
58
51
0
0
48
1.00
46668--46749
41
2.0
41
97
0
155
30
6
26
36
1.81
49058--49110
27
2.0
27
85
7
74
39
9
1
49
1.46
49573--49826
138
1.8
139
89
4
406
38
11
1
48
1.47
51048--51089
22
1.9
22
95
0
75
11
19
28
40
1.87
51475--51624
77
1.9
77
95
0
273
28
16
16
38
1.91
53334--53364
16
1.9
16
100
0
62
54
32
6
6
1.51
53387--53425
20
2.0
20
89
0
60
53
2
5
38
1.37

Tables:   1

The End!