genome.fa.s12776.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012776.1 Corchorus capsularis cultivar CVL-1 contig12797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55500

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2316--2342	2	13.5	2	100	0	54	0	0	48	51	1.00
2510--2746	125	1.9	127	83	7	313	35	12	6	45	1.67
3037--3064	2	14.0	2	100	0	56	50	0	0	50	1.00
4168--4225	16	3.6	16	83	0	80	31	37	22	8	1.84
4153--4223	32	2.3	31	82	4	88	28	42	22	7	1.79
4169--4240	32	2.2	32	82	0	81	34	36	19	9	1.85
5342--5423	42	2.0	42	95	0	146	41	18	3	36	1.68
6165--6568	22	18.5	22	71	12	237	18	19	6	54	1.65
6180--6536	43	8.1	42	74	10	252	18	19	6	54	1.65
6380--6457	14	5.7	13	70	10	57	17	20	2	58	1.50
6753--7275	55	9.5	55	90	2	723	24	16	7	51	1.71
6763--6905	29	5.1	29	64	21	90	25	17	8	48	1.75
7047--7132	25	3.2	25	64	20	66	24	16	6	52	1.68
7944--8061	50	2.3	50	81	7	123	33	12	9	44	1.75
7944--8131	51	3.8	49	75	10	150	33	13	9	43	1.76
9788--9927	28	5.3	27	69	17	114	42	2	14	41	1.57
9755--9947	52	3.7	52	95	2	334	43	2	15	39	1.59
9755--9947	105	1.8	104	93	3	334	43	2	15	39	1.59
9842--9921	24	3.2	24	65	25	65	41	2	13	42	1.58
11046--11333	68	4.2	68	88	3	386	28	19	27	24	1.98
11842--11945	51	2.1	50	87	1	145	36	11	15	36	1.84
12914--12948	16	2.2	16	90	10	54	0	22	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13522--13573	14	3.8	13	80	10	50	38	11	5	44	1.65
16289--16657	22	16.8	23	71	19	154	18	19	6	54	1.65
16301--16657	43	8.1	42	74	13	256	18	19	6	54	1.65
16401--16657	22	12.0	20	71	15	160	19	20	6	54	1.65
16501--16578	14	5.7	13	70	10	57	17	20	2	58	1.50
16616--16662	22	2.1	22	88	0	67	23	21	2	53	1.57
16874--17234	55	6.6	55	93	1	546	26	16	6	50	1.71
16884--17136	29	9.1	29	63	22	96	25	16	7	49	1.73
17138--17227	30	3.2	30	64	20	75	25	15	5	53	1.64
20226--20470	52	4.7	52	96	2	438	42	2	15	40	1.59
20226--20470	105	2.3	105	95	2	440	42	2	15	40	1.59
23437--23496	29	2.1	29	100	0	120	18	20	26	35	1.95
24203--24235	16	2.0	17	88	5	50	54	36	6	3	1.41
24225--24275	16	3.3	15	81	15	59	50	27	11	9	1.70
24297--24337	20	2.0	20	86	9	57	53	4	4	36	1.44
24478--24589	32	3.5	32	90	2	163	36	34	10	17	1.85
24478--24602	16	7.8	16	69	11	94	36	36	11	16	1.84
24572--24632	23	2.6	23	81	5	77	37	40	14	6	1.72
30522--30579	2	28.5	2	86	10	73	50	3	0	46	1.18
36689--36737	25	2.0	25	87	0	71	16	30	16	36	1.91
40118--40240	41	3.0	42	75	10	135	43	28	10	17	1.83
40118--40296	82	2.2	83	85	8	233	39	28	10	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43046--43081	10	3.5	10	92	7	63	88	0	2	8	0.59
43046--43081	11	3.4	11	88	3	56	88	0	2	8	0.59
55404--55482	33	2.4	34	76	6	90	26	11	21	40	1.87

Tables:   1

The End!