Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012778.1 Corchorus capsularis cultivar CVL-1 contig12799, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13708

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
479--646
50
3.1
57
63
28
137
48
1
11
39
1.47
465--738
107
2.5
109
90
6
412
48
1
10
38
1.49
1892--1998
50
2.1
53
83
13
134
35
8
17
38
1.80
8574--8621
15
2.8
16
75
24
53
62
6
10
20
1.49
9863--9915
11
5.2
10
78
17
56
39
18
1
39
1.62
9863--9916
19
2.6
21
77
19
60
40
18
1
38
1.61
11002--11187
36
4.9
37
85
8
223
29
20
10
39
1.85
10995--11187
78
2.5
78
85
8
240
29
20
10
39
1.85
11197--11293
32
2.9
32
81
7
95
25
26
7
40
1.82
11197--12100
74
12.3
73
81
12
330
25
23
7
44
1.79
11269--11844
39
15.6
39
85
10
567
25
21
7
44
1.78
11277--11737
150
3.1
148
90
5
695
25
21
8
45
1.79
11277--11737
35
12.5
35
86
10
570
25
21
8
45
1.79
11764--11859
18
5.2
18
63
22
56
28
25
5
41
1.76
11739--12109
37
10.0
37
87
1
528
25
24
7
43
1.79
11739--12106
186
2.0
185
87
0
538
24
25
7
43
1.79
11968--12100
19
7.2
19
64
17
82
23
24
9
42
1.83
12185--12707
37
14.2
37
84
5
603
27
19
7
45
1.77
12185--12707
74
7.1
74
85
4
666
27
19
7
45
1.77

Tables:   1

The End!