Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012779.1 Corchorus capsularis cultivar CVL-1 contig12800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64395

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4958--4988
14
2.2
14
100
0
62
29
0
12
58
1.35
6129--6153
11
2.3
11
100
0
50
32
20
8
40
1.81
6333--6386
25
2.2
25
86
0
72
42
9
20
27
1.82
6477--6526
26
1.9
26
87
0
73
44
18
10
28
1.81
6822--6995
22
8.1
22
88
2
230
25
28
24
21
1.99
6823--6989
43
3.9
44
88
3
234
26
28
23
20
1.99
9757--9893
6
23.2
6
86
8
165
0
17
3
78
0.89
11557--11596
19
2.1
19
85
0
53
10
45
2
42
1.51
13050--13157
44
2.4
44
85
1
162
41
17
6
34
1.75
13164--13247
9
8.8
9
75
18
55
4
13
1
80
0.92
13178--13245
18
3.8
18
77
12
61
5
11
1
80
0.94
16484--16514
12
2.6
12
94
0
53
19
9
38
32
1.84
18549--18601
22
2.4
22
71
9
54
26
7
5
60
1.46
20067--20097
16
1.9
16
93
0
53
77
0
22
0
0.77
20675--20740
6
10.8
6
81
15
82
81
1
16
0
0.76
20675--20737
12
5.2
12
87
12
94
82
1
15
0
0.74
20675--20740
25
2.8
24
90
9
100
81
1
16
0
0.76
20675--20740
19
3.6
19
82
13
93
81
1
16
0
0.76
22079--22117
16
2.4
16
100
0
78
23
43
25
7
1.80
23639--23904
69
3.8
69
79
8
299
24
28
16
30
1.97
23639--23897
138
1.9
138
88
1
394
24
27
17
30
1.97
26296--26335
19
2.1
19
85
0
53
10
45
2
42
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27511--27588
30
2.5
31
85
2
104
33
25
25
15
1.95
27598--27671
31
2.4
31
83
0
85
29
24
27
18
1.98
28565--28619
17
3.1
17
74
25
51
72
1
20
5
1.13
28861--28911
22
2.3
22
75
3
57
56
7
9
25
1.58
30539--30721
36
4.9
36
85
9
224
28
20
10
39
1.87
30532--30723
78
2.5
78
84
9
238
28
20
10
39
1.87
30715--30868
37
4.3
35
77
11
134
25
24
9
40
1.84
30766--30829
32
2.0
32
87
0
92
23
29
7
39
1.83
30813--31019
35
5.8
35
90
3
290
26
19
7
45
1.77
36828--37394
281
2.0
281
99
0
1116
32
14
26
26
1.95
42003--42056
25
2.2
25
89
0
81
42
9
18
29
1.81
42147--42196
26
1.9
26
83
0
64
44
18
12
26
1.84
45079--45229
41
3.6
41
76
3
142
40
29
9
21
1.84
45073--45229
82
1.9
85
88
6
241
40
28
8
21
1.83
48007--48057
22
2.2
24
83
16
72
41
0
0
58
0.98
48007--48055
25
2.0
25
84
8
64
40
0
0
59
0.98
48329--48367
11
3.5
11
83
13
53
56
2
0
41
1.13
51715--51746
2
16.0
2
100
0
64
50
0
0
50
1.00
55193--55254
30
2.1
30
100
0
124
35
19
9
35
1.85
63691--63736
23
2.0
23
91
8
76
52
2
0
45
1.13
64254--64395
32
4.4
32
87
7
171
15
38
33
13
1.86

Tables:   1

The End!