genome.fa.s12780.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012780.1 Corchorus capsularis cultivar CVL-1 contig12801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96659

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24--97	32	2.3	32	90	0	121	13	43	33	9	1.76
87--173	33	2.6	34	81	3	97	13	28	37	19	1.90
3663--3726	33	1.9	33	90	6	103	12	29	45	12	1.79
3877--4059	32	5.6	33	89	4	248	13	30	42	14	1.84
3983--4034	16	3.2	16	68	10	52	9	28	48	13	1.74
3877--4060	65	2.8	66	86	2	266	13	30	41	14	1.84
10640--10691	10	4.9	10	73	13	50	5	23	48	23	1.72
10642--10715	33	2.2	33	85	4	96	8	24	44	22	1.80
10702--10779	33	2.4	33	88	0	111	15	29	37	17	1.91
17179--17250	33	2.2	32	85	9	92	6	23	47	22	1.75
17237--17316	33	2.4	33	89	0	124	15	27	38	18	1.91
17671--17710	12	3.2	13	83	16	50	52	0	0	47	1.00
20428--20471	21	2.1	21	82	0	52	18	4	6	70	1.27
21038--21089	25	2.0	25	88	7	77	13	11	26	48	1.77
22858--22934	29	2.6	28	76	15	84	40	27	14	18	1.89
23748--24161	216	1.9	216	99	0	819	29	16	21	32	1.95
29271--29333	19	3.4	19	70	12	67	28	36	17	17	1.93
29259--29333	37	2.0	38	94	2	134	29	34	17	18	1.94
33356--33391	2	18.0	2	88	0	54	0	2	44	52	1.15
34544--34729	90	2.1	91	98	1	365	31	6	34	26	1.82
48237--48296	30	2.0	30	90	0	93	36	20	25	18	1.94
52883--52932	20	2.4	22	76	10	59	66	8	6	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57946--58013	34	2.0	34	86	11	95	50	7	11	30	1.66
61928--62043	58	2.0	58	96	0	214	42	18	21	17	1.89
63538--63597	30	2.0	30	86	0	84	36	18	25	20	1.94
65628--65659	13	2.5	13	94	0	55	12	50	6	31	1.65
65759--65840	41	2.0	41	88	4	121	28	14	17	40	1.88
65839--65875	13	2.8	13	87	0	56	32	8	43	16	1.77
69291--69340	21	2.4	21	93	0	91	28	26	38	8	1.84
77017--77045	14	2.1	14	100	0	58	20	31	34	13	1.92
81467--81507	20	2.0	20	95	0	73	29	0	21	48	1.50
86568--86619	21	2.5	21	100	0	104	19	11	19	50	1.77
89778--89814	19	1.9	19	88	0	56	40	24	18	16	1.90
90297--90398	47	2.2	46	91	1	159	34	21	10	33	1.88
90993--91045	25	2.1	26	89	3	81	13	5	7	73	1.23
94569--94772	26	8.0	26	73	19	135	21	21	3	54	1.59
94672--94732	27	2.3	26	88	11	88	19	18	0	62	1.33
94715--94751	19	1.9	19	88	0	56	16	24	0	59	1.37
94683--94772	46	2.0	47	86	4	130	18	23	1	56	1.48
94936--95274	22	15.9	22	73	9	152	23	20	4	51	1.66
95016--95093	20	3.8	20	78	10	77	17	16	6	58	1.58
95144--95265	20	5.9	20	76	7	109	25	20	4	50	1.66
94936--95265	106	3.1	104	76	7	310	23	20	4	51	1.67
95313--95408	30	3.1	30	87	4	138	23	16	9	50	1.74

Tables:   1

The End!