Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012781.1 Corchorus capsularis cultivar CVL-1 contig12802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38756

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6715--6824
46
2.4
45
85
8
125
50
16
6
27
1.69
6687--6837
38
3.7
40
72
19
139
47
13
7
31
1.70
7132--7210
30
2.7
29
86
4
95
39
17
8
34
1.81
32638--33202
45
13.1
45
80
9
562
45
8
16
29
1.77
32638--33183
87
6.4
88
84
7
548
45
8
16
29
1.76
32638--33149
132
3.9
132
85
7
619
45
8
16
29
1.76
33436--33503
27
2.6
25
77
13
64
48
8
16
26
1.75
33455--33538
36
2.3
37
83
6
100
44
9
16
29
1.80
33551--34149
38
15.4
37
74
16
247
46
8
20
24
1.78
33550--33690
73
1.9
74
89
4
223
46
9
20
23
1.79
33711--34149
39
11.5
39
80
13
248
46
8
20
25
1.78
33619--33786
93
1.8
92
86
8
243
45
9
20
24
1.81
33705--33919
74
2.8
75
81
8
240
46
9
18
26
1.79
33704--34157
78
6.0
76
78
12
388
46
8
20
24
1.77
33804--34157
38
9.3
39
82
9
376
47
7
21
24
1.76
33905--34247
39
9.2
36
76
13
141
43
7
23
25
1.80
34239--34432
36
5.2
36
81
10
203
42
9
18
29
1.82
34278--34425
77
1.9
77
90
0
233
41
10
19
29
1.84
34651--34728
39
2.0
39
94
0
138
48
10
21
19
1.78
35577--35623
20
2.5
18
86
6
67
40
2
6
51
1.39
35697--35743
2
25.0
2
83
12
64
51
2
0
46
1.13
36688--37152
231
2.0
232
90
3
727
29
21
16
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38374--38408
16
2.2
16
100
0
70
45
17
25
11
1.81

Tables:   1

The End!