Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012784.1 Corchorus capsularis cultivar CVL-1 contig12805, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1846
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34


Found at i:1416 original size:25 final size:25

Alignment explanation


    Indices: 1370--1419  Score: 73
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1360 TGATACGCTT

                        *  * *       
       1370 AACCATGTACTATAATGTTTATCCA
          1 AACCATGTACTACAAAGCTTATCCA

                                     
       1395 AACCATGTACTACAAAGCTTATCCA
          1 AACCATGTACTACAAAGCTTATCCA

       1420 TTGCACCATC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30


Consensus pattern (25 bp):   
AACCATGTACTACAAAGCTTATCCA
Done.