Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012788.1 Corchorus capsularis cultivar CVL-1 contig12809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52013

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2026--2052
2
13.5
2
100
0
54
48
0
0
51
1.00
10589--10662
27
2.7
27
89
2
103
44
25
12
17
1.83
10998--11041
23
1.9
23
85
0
61
52
4
2
40
1.34
12641--12678
5
7.6
5
87
0
58
57
2
0
39
1.12
12734--13075
180
1.9
180
84
3
465
35
16
14
34
1.89
12733--13156
180
2.4
180
81
3
444
34
15
14
35
1.89
16859--16884
10
2.6
10
100
0
52
19
0
7
73
1.07
20639--20735
48
2.0
48
91
0
158
46
11
11
30
1.75
20988--21060
29
2.5
31
82
11
98
19
30
15
35
1.92
22540--22579
2
20.5
2
87
5
55
52
0
2
45
1.14
24986--25016
16
2.0
15
93
6
53
77
6
16
0
0.97
24980--25254
148
1.9
146
87
1
406
52
13
16
17
1.76
28040--28088
21
2.3
21
89
0
71
28
24
34
12
1.91
32197--32559
121
3.0
121
81
4
428
39
13
9
37
1.78
40491--40530
13
3.1
13
85
0
53
45
15
15
25
1.84
40916--41057
41
3.5
41
87
3
196
35
16
14
33
1.89
42348--42384
2
18.0
2
88
5
56
45
0
5
48
1.25
48146--48194
24
2.1
23
85
7
64
14
24
4
57
1.55
49370--49426
28
1.9
30
86
10
82
21
19
17
42
1.90
50405--50469
31
2.1
31
94
0
112
41
21
13
23
1.89

Tables:   1

The End!