Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012789.1 Corchorus capsularis cultivar CVL-1 contig12810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24904

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10323--10688
156
2.3
154
77
10
370
33
19
16
30
1.94
11220--11271
15
3.3
16
79
12
63
50
0
0
50
1.00
20888--20936
21
2.4
19
80
12
53
42
2
0
55
1.11
22847--22884
19
2.0
20
85
15
53
28
5
2
63
1.30
23050--23152
22
4.6
22
74
7
91
36
9
16
36
1.82
23300--23606
22
13.8
21
68
15
97
41
10
14
34
1.79
23377--23477
21
4.6
22
75
17
93
44
10
10
33
1.75
23413--23538
44
2.8
44
79
7
121
42
10
12
34
1.77
23713--23807
22
4.6
20
79
7
84
44
9
16
29
1.79
23755--24003
22
11.5
22
72
12
149
41
9
14
34
1.78
23898--23999
23
4.5
22
79
9
82
40
8
12
38
1.75
23966--24021
22
2.5
22
82
0
67
35
10
14
39
1.81
24072--24275
22
9.2
22
69
9
83
38
11
14
34
1.83
24104--24276
22
7.9
22
68
11
95
41
10
13
34
1.80
24396--24428
2
16.5
2
100
0
66
48
0
0
51
1.00
24596--24668
30
2.4
31
79
2
76
30
16
15
38
1.89

Tables:   1

The End!