Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001279.1 Corchorus capsularis cultivar CVL-1 contig01279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:783 original size:15 final size:15

Alignment explanation


    Indices: 734--764  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        724 AAAGAGTAAG

                   *       
        734 AAAAATGGTAAAAGT
          1 AAAAATGATAAAAGT

                           
        749 AAAAATGATAAAAGT
          1 AAAAATGATAAAAGT

             
        764 A
          1 A

        765 GTAAAAGTAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.65, C:0.00, G:0.16, T:0.19


Consensus pattern (15 bp):   
AAAAATGATAAAAGT
Done.