Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012793.1 Corchorus capsularis cultivar CVL-1 contig12814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61544
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Found at i:7694 original size:1 final size:1
Alignment explanation
Indices: 7688--7713 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
7678 ACAGTTCAAG
7688 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
7714 ATCAAGAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8188 original size:19 final size:19
Alignment explanation
Indices: 8164--8203 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
8154 ATTCAAAAAG
8164 TTGGGTTTGGATCTGTATC
1 TTGGGTTTGGATCTGTATC
8183 TTGGGTTTGGATCTGTATC
1 TTGGGTTTGGATCTGTATC
8202 TT
1 TT
8204 CAGTATAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.30, T:0.50
Consensus pattern (19 bp):
TTGGGTTTGGATCTGTATC
Found at i:10298 original size:12 final size:12
Alignment explanation
Indices: 10281--10305 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10271 TAAACTATAG
10281 TTTTTAGACGTT
1 TTTTTAGACGTT
10293 TTTTTAGACGTT
1 TTTTTAGACGTT
10305 T
1 T
10306 GACCCCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TTTTTAGACGTT
Found at i:10626 original size:19 final size:21
Alignment explanation
Indices: 10597--10638 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
10587 ATAAACTATG
10597 AACTAAAATTG-AAATAATTA
1 AACTAAAATTGCAAATAATTA
*
10617 AACT-AAATTGCAAGTAATTA
1 AACTAAAATTGCAAATAATTA
10637 AA
1 AA
10639 ATAGAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.29
Consensus pattern (21 bp):
AACTAAAATTGCAAATAATTA
Found at i:16650 original size:13 final size:13
Alignment explanation
Indices: 16634--16669 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
16624 AACATCCAAA
16634 AACAACAAAGCAG
1 AACAACAAAGCAG
*
16647 AACAACAAAGTAG
1 AACAACAAAGCAG
*
16660 GACAACAAAG
1 AACAACAAAG
16670 GGATGGGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.61, C:0.19, G:0.17, T:0.03
Consensus pattern (13 bp):
AACAACAAAGCAG
Found at i:18541 original size:3 final size:3
Alignment explanation
Indices: 18533--18569 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
18523 TAGTTGTGTG
18533 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
18570 GCTTTGATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:19521 original size:16 final size:16
Alignment explanation
Indices: 19500--19534 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
19490 ACAATTCAGA
*
19500 AAGCAGAAGAGCTCTG
1 AAGCAGAAAAGCTCTG
19516 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
19532 AAG
1 AAG
19535 TATTTCAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.29, T:0.11
Consensus pattern (16 bp):
AAGCAGAAAAGCTCTG
Found at i:20365 original size:16 final size:16
Alignment explanation
Indices: 20344--20378 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
20334 ACAATTCAGA
*
20344 AAGCAGAAGAGCTCTG
1 AAGCAGAAAAGCTCTG
20360 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
20376 AAG
1 AAG
20379 TATTTCAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.29, T:0.11
Consensus pattern (16 bp):
AAGCAGAAAAGCTCTG
Found at i:20734 original size:844 final size:843
Alignment explanation
Indices: 19104--20797 Score: 3271
Period size: 844 Copynumber: 2.0 Consensus size: 843
19094 AATTTCGACC
*
19104 AATCAGAAATTTTCTACAAATTTTCTTTTGAGAATTTATCCTTAAATTTATTGGATATTTTCTAA
1 AATCAAAAATTTTCTACAAATTTTCTTTTGAGAATTTATCCTTAAATTTATTGGATATTTTCTAA
19169 AGAAAAATGGTAGATAAATATGACACATGGTCTAACCAATTAAAATTTCAATGTTTAATGGTTTG
66 AGAAAAATGGTAGATAAATATGACACATGGTCTAACCAATTAAAATTTCAATGTTTAATGGTTTG
* *
19234 ACCAATCAAAATTAAGTTGTGAGTCATCACCTTTTATCTCTAATTGAATTGAGATAATTGGTAAA
131 ACCAATCAAAACTAAGTTGTGAGTCATCACCTTTTATCTCTAATTAAATTGAGATAATTGGTAAA
* *
19299 TAAATTGCATTATCTGGCCAATCAAATCTCAAGGTTTCAAGCATTAACCAATCAGAAATTACTGT
196 TAAATTGCATCATCTGGCCAATCAAATCTCAAGGTTTCAAGCATTAACCAATCAGAAATCACTGT
19364 TGTGTCATCTTATTTATCTCTAATTAAAATTAATTATTTAGAGATAAATAACAAGGAGAAATTAA
261 TGTGTCATCTTATTTATCTCTAATTAAAATTAATTATTTAGAGATAAATAACAAGGAGAAATTAA
19429 GTTATCTTGAAACTCTCCATCCCCCACTATAAATACCAAGCTCCCAAGTCATTTTCAAGAGACAA
326 GTTATCTTGAAACTCTCCATCCCCCACTATAAATACCAAGCTCCCAAGTCATTTTCAAGAGACAA
19494 TTCAGAAAGCAGAAGAGCTCTGAAGCAGAAAAGCTCTGAAGTATTTCAGATGTTCTTATTCTGAT
391 TTCAGAAAGCAGAAGAGCTCTGAAGCAGAAAAGCTCTGAAGTATTTCAGATGTTCTTATTCTGAT
*
19559 CTTCACCAAAGCTTAAGAAGATTGAAAGAAGATCCACGTATGTGGAAAATTCTTCTTTCAAAGAA
456 ATTCACCAAAGCTTAAGAAGATTGAAAGAAGATCCACGTATGTGGAAAATTCTTCTTTCAAAGAA
*
19624 GATTCAATTATCGGAGAATTACTGAAGACCCAGTTATTGGGAAATTATTGAAAGAAGATCCACGT
521 GATTCAATTATCGGAGAATTACTGAAAACCCAGTTATTGGGAAATTATTGAAAGAAGATCCACGT
19689 ATGTGGAGGATTCTTCTTTCAAAGAAGATCCAAGGAAGATTTTCAAAGATTTACTGAAGCTCGCT
586 ATGTGGAGGATTCTTCTTTCAAAGAAGATCCAAGGAAGATTTTCAAAGATTTACTGAAGCTCGCT
*
19754 TTCAAGAAATTATTATTTTGATCTTCATCAACATATTTGAAGAAGATCATTTGTGTTTGTTCAAG
651 TTCAAGAAATTATTATTTTGATCTTCATCAACATATTTGAAGAAGATCATTTGTGTTCGTTCAAG
19819 ATCAAGTCATTCGACCATTGAATCAAATTATCATCAATTCGAGATCAAGTCATCAAAGACCCTCG
716 ATCAAGTCATTCGACCATTGAATCAAATTATCATCAATTCGAGATCAAGTCATCAAAGACCCTCG
19884 AATCAAATCAAATTCCCAAGTCATCAATTCAAGATTAAGTCATTCGACTCTTGAATCAAATCA
781 AATCAAATCAAATTCCCAAGTCATCAATTCAAGATTAAGTCATTCGACTCTTGAATCAAATCA
19947 AATCAAAAATTTTCTACAAATTTTCTTTTGAGAATTTATCCTTAAATTTATTGGATATTTTCTAA
1 AATCAAAAATTTTCTACAAATTTTCTTTTGAGAATTTATCCTTAAATTTATTGGATATTTTCTAA
20012 AGAAAAATGGTAGATAAATATGACACATGGTCTAACCAATTAAAATTTCAATGTTTAATGGTTTG
66 AGAAAAATGGTAGATAAATATGACACATGGTCTAACCAATTAAAATTTCAATGTTTAATGGTTTG
20077 ACCAATCAAAACTAAGTTGTGAGTCATCACCTTTTATCTCTAATTAAATTGAGATAATTGGTAAA
131 ACCAATCAAAACTAAGTTGTGAGTCATCACCTTTTATCTCTAATTAAATTGAGATAATTGGTAAA
20142 TAAATTGCATCATCTGGCCAATCAAATCTCAAGGTTTCAAGCATTAACCAATCAGAAATCACTGT
196 TAAATTGCATCATCTGGCCAATCAAATCTCAAGGTTTCAAGCATTAACCAATCAGAAATCACTGT
20207 TGTGTCATCTTATTTATCTCTAATTAAAATTAATTATTTAGAGATAAATAACAAGGAGAAATTAA
261 TGTGTCATCTTATTTATCTCTAATTAAAATTAATTATTTAGAGATAAATAACAAGGAGAAATTAA
20272 GTTATCTTGAAACTCTCCATCCCCCCACTATAAATACCAAGCTCCCAAGTCATTTTCAAGAGACA
326 GTTATCTTGAAACTCTCCAT-CCCCCACTATAAATACCAAGCTCCCAAGTCATTTTCAAGAGACA
20337 ATTCAGAAAGCAGAAGAGCTCTGAAGCAGAAAAGCTCTGAAGTATTTCAGATGTTCTTATTCTGA
390 ATTCAGAAAGCAGAAGAGCTCTGAAGCAGAAAAGCTCTGAAGTATTTCAGATGTTCTTATTCTGA
20402 TATTCACCAAAGCTTAAGAAGATTGAAAGAAGATCCACGTATGTGGAAAATTCTTCTTTCAAAGA
455 TATTCACCAAAGCTTAAGAAGATTGAAAGAAGATCCACGTATGTGGAAAATTCTTCTTTCAAAGA
20467 AGATTCAATTATCGGAGAATTACTGAAAACCCAGTTATTGGGAAATTATTGAAAGAAGATCCACG
520 AGATTCAATTATCGGAGAATTACTGAAAACCCAGTTATTGGGAAATTATTGAAAGAAGATCCACG
*
20532 TATGTGGAGGATTCTTCTTTCAAAGAAGATCCAAGGAAGATTTTCAAAGATTTACTGAAGCTCGT
585 TATGTGGAGGATTCTTCTTTCAAAGAAGATCCAAGGAAGATTTTCAAAGATTTACTGAAGCTCGC
20597 TTTCAAGAAATTATTATTTTGATCTTCATCAACATATTTGAAGAAGATCATTTGTGTTCGTTCAA
650 TTTCAAGAAATTATTATTTTGATCTTCATCAACATATTTGAAGAAGATCATTTGTGTTCGTTCAA
*
20662 GATCAAGTCATTCGACCCTTGAATCAAATTATCATCAATTCGAGATCAAGTCATCAAAGACCCTC
715 GATCAAGTCATTCGACCATTGAATCAAATTATCATCAATTCGAGATCAAGTCATCAAAGACCCTC
* *
20727 GAATCAAATCAAATTCCCAAGTCATTAATTCAAGATTAAGTCATTCGACTTTTGAATCAAATCA
780 GAATCAAATCAAATTCCCAAGTCATCAATTCAAGATTAAGTCATTCGACTCTTGAATCAAATCA
20791 AATCAAA
1 AATCAAA
20798 CTCTCAAATT
Statistics
Matches: 838, Mismatches: 12, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
843 340 0.41
844 498 0.59
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32
Consensus pattern (843 bp):
AATCAAAAATTTTCTACAAATTTTCTTTTGAGAATTTATCCTTAAATTTATTGGATATTTTCTAA
AGAAAAATGGTAGATAAATATGACACATGGTCTAACCAATTAAAATTTCAATGTTTAATGGTTTG
ACCAATCAAAACTAAGTTGTGAGTCATCACCTTTTATCTCTAATTAAATTGAGATAATTGGTAAA
TAAATTGCATCATCTGGCCAATCAAATCTCAAGGTTTCAAGCATTAACCAATCAGAAATCACTGT
TGTGTCATCTTATTTATCTCTAATTAAAATTAATTATTTAGAGATAAATAACAAGGAGAAATTAA
GTTATCTTGAAACTCTCCATCCCCCACTATAAATACCAAGCTCCCAAGTCATTTTCAAGAGACAA
TTCAGAAAGCAGAAGAGCTCTGAAGCAGAAAAGCTCTGAAGTATTTCAGATGTTCTTATTCTGAT
ATTCACCAAAGCTTAAGAAGATTGAAAGAAGATCCACGTATGTGGAAAATTCTTCTTTCAAAGAA
GATTCAATTATCGGAGAATTACTGAAAACCCAGTTATTGGGAAATTATTGAAAGAAGATCCACGT
ATGTGGAGGATTCTTCTTTCAAAGAAGATCCAAGGAAGATTTTCAAAGATTTACTGAAGCTCGCT
TTCAAGAAATTATTATTTTGATCTTCATCAACATATTTGAAGAAGATCATTTGTGTTCGTTCAAG
ATCAAGTCATTCGACCATTGAATCAAATTATCATCAATTCGAGATCAAGTCATCAAAGACCCTCG
AATCAAATCAAATTCCCAAGTCATCAATTCAAGATTAAGTCATTCGACTCTTGAATCAAATCA
Found at i:22695 original size:71 final size:73
Alignment explanation
Indices: 22598--22740 Score: 236
Period size: 71 Copynumber: 2.0 Consensus size: 73
22588 GTCAAACCAA
* ** *
22598 AAAAAAAAAGAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGTTTAGGCAAAAGTTAGAGCA-A
1 AAAAAAAAAGAGCTCGCTAAGTTGAAAATCCTGAAAAGGACGACTTAGGCAAAACTTAGAGCACA
22662 AAAAAAAG
66 AAAAAAAG
22670 AAAAAAAAAG-GCTCGCTAAGTTGAAAATCCTGAAAAGGACGACTTAGGCAAAACTTAGAGCACA
1 AAAAAAAAAGAGCTCGCTAAGTTGAAAATCCTGAAAAGGACGACTTAGGCAAAACTTAGAGCACA
22734 AAAAAAA
66 AAAAAAA
22741 AAGTGAACTA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
71 48 0.73
72 18 0.27
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.15
Consensus pattern (73 bp):
AAAAAAAAAGAGCTCGCTAAGTTGAAAATCCTGAAAAGGACGACTTAGGCAAAACTTAGAGCACA
AAAAAAAG
Found at i:23925 original size:5 final size:5
Alignment explanation
Indices: 23915--23941 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
23905 TCGACTCTTG
23915 AATCA AATCA AATCA AATCA AATCA AA
1 AATCA AATCA AATCA AATCA AATCA AA
23942 CTCTCAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AATCA
Found at i:27881 original size:21 final size:21
Alignment explanation
Indices: 27856--27904 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
27846 GCTTAATCGT
27856 GAAGGAAAGAAGACATGTCGC
1 GAAGGAAAGAAGACATGTCGC
*
27877 GAAGGAAATAAGACATGTCGC
1 GAAGGAAAGAAGACATGTCGC
27898 GAAGGAA
1 GAAGGAA
27905 GCCTGTCGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.45, C:0.12, G:0.33, T:0.10
Consensus pattern (21 bp):
GAAGGAAAGAAGACATGTCGC
Found at i:28774 original size:21 final size:22
Alignment explanation
Indices: 28750--28794 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
28740 AATAACTGAA
*
28750 TTGCTAAACACCGCCCCA-TTT
1 TTGCTAAACACCACCCCACTTT
**
28771 TTGCTATTCACCACCCCACTTT
1 TTGCTAAACACCACCCCACTTT
28793 TT
1 TT
28795 ACACTTTTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.20, C:0.38, G:0.07, T:0.36
Consensus pattern (22 bp):
TTGCTAAACACCACCCCACTTT
Found at i:29008 original size:14 final size:14
Alignment explanation
Indices: 28985--29021 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
28975 TTTGCAGATC
28985 TAGATCTAGAGAAA
1 TAGATCTAGAGAAA
*
28999 TAGATGTAGAGAAA
1 TAGATCTAGAGAAA
*
29013 TAAATCTAG
1 TAGATCTAG
29022 GGTTTTGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.22, T:0.24
Consensus pattern (14 bp):
TAGATCTAGAGAAA
Found at i:29115 original size:32 final size:32
Alignment explanation
Indices: 29042--29116 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
29032 TGGCTGTGCT
*
29042 GCCCCAGGGGGGTGGCAGGCCGTGGCAAGGCC
1 GCCCCAGGGGGGCGGCAGGCCGTGGCAAGGCC
* * * * *
29074 ACCCCAGGGGGGCGGCATGTCGTTGCAAGGTC
1 GCCCCAGGGGGGCGGCAGGCCGTGGCAAGGCC
*
29106 GCCCTAGGGGG
1 GCCCCAGGGGG
29117 ATGGTTGTGC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.13, C:0.29, G:0.47, T:0.11
Consensus pattern (32 bp):
GCCCCAGGGGGGCGGCAGGCCGTGGCAAGGCC
Found at i:45907 original size:15 final size:15
Alignment explanation
Indices: 45855--45898 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
45845 ATGATTATTT
*
45855 GCACCATAGTTGTTC
1 GCACCATTGTTGTTC
* *
45870 GCACCATTGTGGTTT
1 GCACCATTGTTGTTC
45885 GCACCATTGTTGTT
1 GCACCATTGTTGTT
45899 GGCGCCATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (15 bp):
GCACCATTGTTGTTC
Found at i:52267 original size:17 final size:17
Alignment explanation
Indices: 52244--52294 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
52234 TGTCTTTTAA
52244 ATATTTTTTTCAATTAC
1 ATATTTTTTTCAATTAC
*
52261 AT-TTTTTCTT---TTAA
1 ATATTTTT-TTCAATTAC
52275 ATATTTTTTTCAATTAC
1 ATATTTTTTTCAATTAC
52292 ATA
1 ATA
52295 ATAATAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
14 7 0.26
15 5 0.19
16 5 0.19
17 10 0.37
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTTTTTTCAATTAC
Found at i:52272 original size:31 final size:32
Alignment explanation
Indices: 52230--52293 Score: 121
Period size: 31 Copynumber: 2.0 Consensus size: 32
52220 TCATCTTTCT
52230 TTTTTGTCTTTTAAATATTTTTTTCAATTACA
1 TTTTTGTCTTTTAAATATTTTTTTCAATTACA
52262 TTTTT-TCTTTTAAATATTTTTTTCAATTACA
1 TTTTTGTCTTTTAAATATTTTTTTCAATTACA
52293 T
1 T
52294 AATAATAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (32 bp):
TTTTTGTCTTTTAAATATTTTTTTCAATTACA
Found at i:59777 original size:21 final size:21
Alignment explanation
Indices: 59748--59790 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
59738 ATAGAGGTGG
59748 CAAACGATTAAGTCTAGCAAT
1 CAAACGATTAAGTCTAGCAAT
*
59769 CAAATGATTAAGTCTAGCAAT
1 CAAACGATTAAGTCTAGCAAT
59790 C
1 C
59791 TCTACAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (21 bp):
CAAACGATTAAGTCTAGCAAT
Done.